Cow genome map
| Conread name: | Ss1.1-rtes03_e2.5 |
| Conread position: | 2-388 |
| Cow position: | chr17:22551866-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 164, 159 |
| Conread position: | 2-568 |
| Cow position: | chr17:22473396-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 148 |
| Conread position: | 2-731 |
| Cow position: | chr17:22552538-22551805 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 163 |
| Conread position: | 3-543 |
| Cow position: | chr17:22499080-22498540 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 154 |
| Conread position: | 4-699 |
| Cow position: | chr17:22590206-22589511 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 408 |
| Conread position: | 5-533 |
| Cow position: | chr17:22452064-22451538 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 12-472 |
| Cow position: | chr17:22551940-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 221 |
| Conread position: | 12-615 |
| Cow position: | chr17:22452309-22451706 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 149 |
| Conread position: | 12-700 |
| Cow position: | chr17:22552192-22551502 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 15-652 |
| Cow position: | chr17:41441048-41440411 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 382 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 15-700 |
| Cow position: | chr17:22552693-22552008 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 16-564 |
| Cow position: | chr17:22452221-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 16-630 |
| Cow position: | chr17:22452389-22451775 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 16-670 |
| Cow position: | chr17:22590278-22589624 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 16-683 |
| Cow position: | chr17:22499319-22498652 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 376 |
| Conread position: | 16-699 |
| Cow position: | chr17:22552272-22551589 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 145 |
| Conread position: | 16-699 |
| Cow position: | chr17:22553112-22552429 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 145 |
| Conread position: | 16-726 |
| Cow position: | chr17:22552944-22552230 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 17-323 |
| Cow position: | chr17:41440542-41440236 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-643 |
| Cow position: | chr17:22552103-22551477 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 17-699 |
| Cow position: | chr17:22552355-22551673 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 301 |
| Conread position: | 17-699 |
| Cow position: | chr17:22552439-22551757 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 17-699 |
| Cow position: | chr17:22552607-22551925 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-699 |
| Cow position: | chr17:22553027-22552345 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 17-731 |
| Cow position: | chr17:22589941-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 212 |
| Conread position: | 17-732 |
| Cow position: | chr17:22552775-22552056 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 17-732 |
| Cow position: | chr17:22552859-22552140 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 21-700 |
| Cow position: | chr17:22499398-22498719 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 394 |
| Conread position: | 25-272 |
| Cow position: | chr17:22589429-22589182 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 30-691 |
| Cow position: | chr17:41440865-41440204 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 388 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 35-651 |
| Cow position: | chr17:22473345-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 199 |
| Conread position: | 38-699 |
| Cow position: | chr17:22473264-22473926 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 184 |
| Conread position: | 80-732 |
| Cow position: | chr17:22590298-22589642 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 81-702 |
| Cow position: | chr17:22452408-22451787 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 84 |
| Conread position: | 81-731 |
| Cow position: | chr17:22553131-22552477 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 331 |
| Conread position: | 115-692 |
| Cow position: | chr17:41441116-41440539 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 120-653 |
| Cow position: | chr17:22473262-22473795 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 282 |
| Conread position: | 247-731 |
| Cow position: | chr17:22452410-22451922 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 145 |
| Conread position: | 372-726 |
| Cow position: | chr17:22473262-22473618 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 451-693 |
| Cow position: | chr17:41441116-41440874 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 70 |
Show alignments to all cow chromosomes.