Cow genome map

Conread name: Ss1.1-rtes03_e2.5

Conread position: 1-695
Cow position:
Alignm length: 698
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 75

Conread position: 2-442
Cow position:
Alignm length: 444
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 163

Conread position: 3-612
Cow position:
Alignm length: 610
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-280
Cow position:
Alignm length: 281
Alignm identity: 194
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 78, 73

Conread position: 4-294
Cow position:
Alignm length: 293
Alignm identity: 193
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 78, 65

Conread position: 4-569
Cow position:
Alignm length: 571
Alignm identity: 351
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 36, 52

Conread position: 4-690
Cow position:
Alignm length: 692
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 77

Conread position: 5-613
Cow position:
Alignm length: 614
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 110

Conread position: 5-654
Cow position:
Alignm length: 656
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 72

Conread position: 5-663
Cow position:
Alignm length: 663
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 402

Conread position: 12-403
Cow position:
Alignm length: 394
Alignm identity: 251
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 153, 146

Conread position: 12-533
Cow position:
Alignm length: 523
Alignm identity: 327
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 56, 64

Conread position: 12-569
Cow position:
Alignm length: 564
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 55

Conread position: 12-612
Cow position:
Alignm length: 606
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 160

Conread position: 12-615
Cow position:
Alignm length: 608
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 88

Conread position: 12-651
Cow position:
Alignm length: 645
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 229

Conread position: 12-654
Cow position:
Alignm length: 648
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 12-655
Cow position:
Alignm length: 648
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 72

Conread position: 12-669
Cow position:
Alignm length: 664
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 153

Conread position: 12-683
Cow position:
Alignm length: 675
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 115

Conread position: 12-694
Cow position:
Alignm length: 686
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 402

Conread position: 12-695
Cow position:
Alignm length: 688
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 65

Conread position: 12-699
Cow position:
Alignm length: 691
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 65

Conread position: 12-699
Cow position:
Alignm length: 692
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 148

Conread position: 12-699
Cow position:
Alignm length: 692
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 64

Conread position: 12-699
Cow position:
Alignm length: 690
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 384

Conread position: 12-699
Cow position:
Alignm length: 694
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 12-700
Cow position:
Alignm length: 693
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 134

Conread position: 12-732
Cow position:
Alignm length: 729
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 53

Conread position: 14-361
Cow position:
Alignm length: 349
Alignm identity: 228
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 68, 60

Conread position: 14-683
Cow position:
Alignm length: 670
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 15-287
Cow position:
Alignm length: 273
Alignm identity: 185
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 15-569
Cow position:
Alignm length: 557
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 75

Conread position: 15-651
Cow position:
Alignm length: 645
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 69

Conread position: 15-695
Cow position:
Alignm length: 684
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 246

Conread position: 15-699
Cow position:
Alignm length: 687
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 390

Conread position: 15-700
Cow position:
Alignm length: 691
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 329

Conread position: 15-700
Cow position:
Alignm length: 694
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 74

Conread position: 16-445
Cow position:
Alignm length: 432
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 143

Conread position: 16-617
Cow position:
Alignm length: 609
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 93

Conread position: 16-651
Cow position:
Alignm length: 641
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 73

Conread position: 16-652
Cow position:
Alignm length: 643
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 17

Conread position: 16-700
Cow position:
Alignm length: 688
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 130

Conread position: 16-702
Cow position:
Alignm length: 691
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 186

Conread position: 17-403
Cow position:
Alignm length: 389
Alignm identity: 251
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 54, 72

Conread position: 17-537
Cow position:
Alignm length: 523
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 205

Conread position: 17-570
Cow position:
Alignm length: 559
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 73

Conread position: 17-617
Cow position:
Alignm length: 606
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 59

Conread position: 17-651
Cow position:
Alignm length: 638
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 56

Conread position: 17-653
Cow position:
Alignm length: 639
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 140

Conread position: 17-692
Cow position:
Alignm length: 680
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 67

Conread position: 17-699
Cow position:
Alignm length: 686
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 64

Conread position: 17-699
Cow position:
Alignm length: 686
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 148

Conread position: 17-700
Cow position:
Alignm length: 691
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 222

Conread position: 17-700
Cow position:
Alignm length: 688
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 148

Conread position: 19-653
Cow position:
Alignm length: 637
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 101

Conread position: 23-651
Cow position:
Alignm length: 634
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 54

Conread position: 23-699
Cow position:
Alignm length: 681
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 310

Conread position: 25-653
Cow position:
Alignm length: 632
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 140

Conread position: 25-663
Cow position:
Alignm length: 642
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 197

Conread position: 38-699
Cow position:
Alignm length: 666
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 354

Conread position: 41-663
Cow position:
Alignm length: 625
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 50

Conread position: 41-695
Cow position:
Alignm length: 660
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 46

Conread position: 41-695
Cow position:
Alignm length: 657
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 151

Conread position: 50-653
Cow position:
Alignm length: 609
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 27

Conread position: 74-699
Cow position:
Alignm length: 633
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 73

Conread position: 88-695
Cow position:
Alignm length: 611
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 482, 260

Conread position: 89-623
Cow position:
Alignm length: 539
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 234

Conread position: 101-576
Cow position:
Alignm length: 476
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 102-699
Cow position:
Alignm length: 601
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 226

Conread position: 109-732
Cow position:
Alignm length: 632
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 52

Conread position: 155-700
Cow position:
Alignm length: 552
Alignm identity: 336
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 88, 10

Conread position: 173-699
Cow position:
Alignm length: 531
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 56

Conread position: 191-700
Cow position:
Alignm length: 512
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 217

Conread position: 193-699
Cow position:
Alignm length: 508
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 199

Conread position: 204-700
Cow position:
Alignm length: 498
Alignm identity: 298
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 381, 60

Conread position: 209-699
Cow position:
Alignm length: 498
Alignm identity: 319
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 46

Conread position: 247-731
Cow position:
Alignm length: 491
Alignm identity: 309
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 105, 13

Conread position: 256-651
Cow position:
Alignm length: 400
Alignm identity: 252
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 36, 43

Conread position: 257-686
Cow position:
Alignm length: 432
Alignm identity: 267
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 161, 81

Conread position: 277-700
Cow position:
Alignm length: 426
Alignm identity: 257
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 298, 307

Conread position: 302-699
Cow position:
Alignm length: 398
Alignm identity: 245
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 295, 0

Conread position: 340-699
Cow position:
Alignm length: 364
Alignm identity: 223
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 89, 98

Conread position: 353-699
Cow position:
Alignm length: 348
Alignm identity: 231
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 225, 21

Show alignments to all cow chromosomes.