Cow genome map
| Conread name: | Ss1.1-rtes03_e2.5 |
| Conread position: | 1-695 |
| Cow position: | chr19:23613746-23614440 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 2-442 |
| Cow position: | chr19:14940639-14941079 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 163 |
| Conread position: | 3-612 |
| Cow position: | chr19:23649870-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-280 |
| Cow position: | chr19:14959099-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 78, 73 |
| Conread position: | 4-294 |
| Cow position: | chr19:20635316-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 4-569 |
| Cow position: | chr19:14915863-14916420 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 4-690 |
| Cow position: | chr19:23614253-23614939 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 5-613 |
| Cow position: | chr19:14959419-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 110 |
| Conread position: | 5-654 |
| Cow position: | chr19:14959991-14959358 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 5-663 |
| Cow position: | chr19:23614002-23614660 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 402 |
| Conread position: | 12-403 |
| Cow position: | chr19:14948394-14948003 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 153, 146 |
| Conread position: | 12-533 |
| Cow position: | chr19:14959818-14959311 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 327 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 12-569 |
| Cow position: | chr19:20678192-20678746 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 12-612 |
| Cow position: | chr19:14960318-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 160 |
| Conread position: | 12-615 |
| Cow position: | chr19:14959900-14959313 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 12-651 |
| Cow position: | chr19:20677856-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 229 |
| Conread position: | 12-654 |
| Cow position: | chr19:23613589-23614231 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 12-655 |
| Cow position: | chr19:20677772-20678415 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 72 |
| Conread position: | 12-669 |
| Cow position: | chr19:20677688-20678345 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 153 |
| Conread position: | 12-683 |
| Cow position: | chr19:43570393-43569732 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 115 |
| Conread position: | 12-694 |
| Cow position: | chr19:14940397-14941079 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 402 |
| Conread position: | 12-695 |
| Cow position: | chr19:14960068-14959401 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 12-699 |
| Cow position: | chr19:14940145-14940832 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 12-699 |
| Cow position: | chr19:14940229-14940916 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 148 |
| Conread position: | 12-699 |
| Cow position: | chr19:14940313-14941000 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 12-699 |
| Cow position: | chr19:23613925-23614612 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 384 |
| Conread position: | 12-699 |
| Cow position: | chr19:23649711-23650398 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 12-700 |
| Cow position: | chr19:23614177-23614865 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 134 |
| Conread position: | 12-732 |
| Cow position: | chr19:14940061-14940784 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 14-361 |
| Cow position: | chr19:23597356-23597702 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 14-683 |
| Cow position: | chr19:23596939-23597605 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 15-287 |
| Cow position: | chr19:23597441-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-569 |
| Cow position: | chr19:23597105-23597659 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 75 |
| Conread position: | 15-651 |
| Cow position: | chr19:23614432-23615068 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 15-695 |
| Cow position: | chr19:14960399-14959723 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 246 |
| Conread position: | 15-699 |
| Cow position: | chr19:23613508-23614192 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 390 |
| Conread position: | 15-700 |
| Cow position: | chr19:20677607-20678292 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 329 |
| Conread position: | 15-700 |
| Cow position: | chr19:23614348-23615033 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 16-445 |
| Cow position: | chr19:23597274-23597702 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 143 |
| Conread position: | 16-617 |
| Cow position: | chr19:20678112-20678713 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 93 |
| Conread position: | 16-651 |
| Cow position: | chr19:20635640-20635005 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 16-652 |
| Cow position: | chr19:20677440-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 16-700 |
| Cow position: | chr19:23613425-23614109 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 130 |
| Conread position: | 16-702 |
| Cow position: | chr19:14959492-14958821 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 186 |
| Conread position: | 17-403 |
| Cow position: | chr19:20635387-20635001 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 17-537 |
| Cow position: | chr19:23597191-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 205 |
| Conread position: | 17-570 |
| Cow position: | chr19:20635555-20635002 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 17-617 |
| Cow position: | chr19:23614518-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 17-651 |
| Cow position: | chr19:20678029-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 17-653 |
| Cow position: | chr19:20677945-20678581 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 140 |
| Conread position: | 17-692 |
| Cow position: | chr19:23649800-23650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 17-699 |
| Cow position: | chr19:23649548-23650230 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 17-699 |
| Cow position: | chr19:23649632-23650314 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 148 |
| Conread position: | 17-700 |
| Cow position: | chr19:23613846-23614529 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 222 |
| Conread position: | 17-700 |
| Cow position: | chr19:23649464-23650147 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 148 |
| Conread position: | 19-653 |
| Cow position: | chr19:20677359-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 101 |
| Conread position: | 23-651 |
| Cow position: | chr19:14939988-14940616 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 23-699 |
| Cow position: | chr19:23649302-23649978 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 310 |
| Conread position: | 25-653 |
| Cow position: | chr19:23649388-23650016 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 140 |
| Conread position: | 25-663 |
| Cow position: | chr19:23613350-23613988 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 197 |
| Conread position: | 38-699 |
| Cow position: | chr19:23597044-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 354 |
| Conread position: | 41-663 |
| Cow position: | chr19:43570447-43569836 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 41-695 |
| Cow position: | chr19:20635699-20635045 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 41-695 |
| Cow position: | chr19:23596882-23597533 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 151 |
| Conread position: | 50-653 |
| Cow position: | chr19:20677309-20677909 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 74-699 |
| Cow position: | chr19:23596831-23597453 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 73 |
| Conread position: | 88-695 |
| Cow position: | chr19:14960410-14959807 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 482, 260 |
| Conread position: | 89-623 |
| Cow position: | chr19:43570242-43569709 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 234 |
| Conread position: | 101-576 |
| Cow position: | chr19:14948470-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 102-699 |
| Cow position: | chr19:23649297-23649894 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 226 |
| Conread position: | 109-732 |
| Cow position: | chr19:14939990-14940616 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 52 |
| Conread position: | 155-700 |
| Cow position: | chr19:20677329-20677872 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 88, 10 |
| Conread position: | 173-699 |
| Cow position: | chr19:14960409-14959885 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 56 |
| Conread position: | 191-700 |
| Cow position: | chr19:14939988-14940497 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 217 |
| Conread position: | 193-699 |
| Cow position: | chr19:23613350-23613856 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 199 |
| Conread position: | 204-700 |
| Cow position: | chr19:43570452-43569967 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 381, 60 |
| Conread position: | 209-699 |
| Cow position: | chr19:20635699-20635209 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 247-731 |
| Cow position: | chr19:14939961-14940448 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 309 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 256-651 |
| Cow position: | chr19:14915863-14916253 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 257-686 |
| Cow position: | chr19:14948484-14948057 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 161, 81 |
| Conread position: | 277-700 |
| Cow position: | chr19:23649304-23649727 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 298, 307 |
| Conread position: | 302-699 |
| Cow position: | chr19:14960448-14960053 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 295, 0 |
| Conread position: | 340-699 |
| Cow position: | chr19:23649283-23649642 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 89, 98 |
| Conread position: | 353-699 |
| Cow position: | chr19:14948470-14948127 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 225, 21 |
Show alignments to all cow chromosomes.