Cow genome map
| Conread name: | Ss1.1-rtes03_e2.5 |
| Conread position: | 1-653 |
| Cow position: | chr2:86465493-86466146 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 117 |
| Conread position: | 4-732 |
| Cow position: | chr2:78755565-78756296 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 102 |
| Conread position: | 5-454 |
| Cow position: | chr2:82800010-82800458 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 76 |
| Conread position: | 11-527 |
| Cow position: | chr2:82799932-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 149 |
| Conread position: | 12-368 |
| Cow position: | chr2:48689387-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 12-452 |
| Cow position: | chr2:48689470-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 321, 57 |
| Conread position: | 12-566 |
| Cow position: | chr2:86465673-86466225 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 535, 0 |
| Conread position: | 12-630 |
| Cow position: | chr2:5874861-5874241 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 369 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 12, 323 |
| Conread position: | 12-699 |
| Cow position: | chr2:78755739-78756423 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 56 |
| Conread position: | 12-700 |
| Cow position: | chr2:78754987-78755673 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 12-705 |
| Cow position: | chr2:86465169-86465863 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 84 |
| Conread position: | 12-711 |
| Cow position: | chr2:86465337-86466040 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 16-533 |
| Cow position: | chr2:78755911-78756425 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 128, 203 |
| Conread position: | 16-660 |
| Cow position: | chr2:78755410-78756052 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 103 |
| Conread position: | 16-701 |
| Cow position: | chr2:5875107-5874420 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 411 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 196, 201 |
| Conread position: | 16-723 |
| Cow position: | chr2:78754253-78754946 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 450 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 144, 149 |
| Conread position: | 16-726 |
| Cow position: | chr2:78754823-78755533 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 17-570 |
| Cow position: | chr2:86465596-86466147 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 15 |
| Conread position: | 17-651 |
| Cow position: | chr2:86465006-86465640 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 61 |
| Conread position: | 17-653 |
| Cow position: | chr2:82799686-82800322 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 17-669 |
| Cow position: | chr2:78754170-78754816 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 389 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 17-670 |
| Cow position: | chr2:5874770-5874117 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 397 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 17-695 |
| Cow position: | chr2:86465426-86466104 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 17-699 |
| Cow position: | chr2:82799518-82800200 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 17-699 |
| Cow position: | chr2:82799602-82800284 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 17-701 |
| Cow position: | chr2:82799770-82800454 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 20-651 |
| Cow position: | chr2:78755663-78756295 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 145 |
| Conread position: | 23-630 |
| Cow position: | chr2:5875016-5874409 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 375 |
| Conread position: | 25-630 |
| Cow position: | chr2:86465266-86465871 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 140 |
| Conread position: | 26-536 |
| Cow position: | chr2:48689540-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 40-723 |
| Cow position: | chr2:5875167-5874480 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 406 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 256, 261 |
| Conread position: | 88-732 |
| Cow position: | chr2:78754811-78755457 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 613, 526 |
| Conread position: | 89-700 |
| Cow position: | chr2:82799506-82800117 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 94-699 |
| Cow position: | chr2:86465167-86465772 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 117-689 |
| Cow position: | chr2:82799452-82800021 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 10 |
| Conread position: | 194-730 |
| Cow position: | chr2:78754180-78754716 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 341 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 199-682 |
| Cow position: | chr2:5875176-5874693 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 265, 269 |
| Conread position: | 218-726 |
| Cow position: | chr2:82799467-82799978 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 178 |
| Conread position: | 264-722 |
| Cow position: | chr2:86465001-86465463 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 109 |
| Conread position: | 284-656 |
| Cow position: | chr2:48689534-48689163 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 34 |
| Conread position: | 362-695 |
| Cow position: | chr2:48689540-48689208 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 40 |
Show alignments to all cow chromosomes.