Cow genome map

Conread name: Ss1.1-rtes03_e2.5

Conread position: 1-653
Cow position: chr22:14430210-14430862 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 408
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 173, 163

Conread position: 1-700
Cow position: chr22:12458632-12457933 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 228

Conread position: 2-378
Cow position: chr22:46654410-46654786 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 225
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 243, 256

Conread position: 2-653
Cow position: chr22:14429875-14430526 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 317

Conread position: 3-368
Cow position: chr22:12475655-12475290 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 81

Conread position: 3-368
Cow position: chr22:12499604-12499969 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 240
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 333, 316

Conread position: 3-652
Cow position: chr22:14441938-14442587 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 386
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 69

Conread position: 3-653
Cow position: chr22:12498932-12499582 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 218

Conread position: 3-653
Cow position: chr22:14467953-14468603 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 157

Conread position: 3-699
Cow position: chr22:46653991-46654687 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 64

Conread position: 3-700
Cow position: chr22:12399782-12399085 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 158

Conread position: 4-281
Cow position: chr22:12458041-12457764 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 78, 71

Conread position: 4-700
Cow position: chr22:12431341-12430645 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 402

Conread position: 4-702
Cow position: chr22:12458545-12457848 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 423, 398

Conread position: 5-440
Cow position: chr22:11641006-11641441 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 282
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 159, 141

Conread position: 5-452
Cow position: chr22:12475737-12475290 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 156

Conread position: 5-452
Cow position: chr22:12499522-12499969 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 312

Conread position: 5-533
Cow position: chr22:12458292-12457764 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 145

Conread position: 5-699
Cow position: chr22:12458460-12457766 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 68

Conread position: 11-287
Cow position: chr22:12499696-12499972 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 11-448
Cow position: chr22:12385344-12384907 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 73

Conread position: 11-449
Cow position: chr22:14430472-14430912 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 265
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 79

Conread position: 11-525
Cow position: chr22:11640928-11641442 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 323
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 62

Conread position: 11-527
Cow position: chr22:12399270-12398754 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 336

Conread position: 12-287
Cow position: chr22:12475562-12475287 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 153, 149

Conread position: 12-548
Cow position: chr22:12418956-12418421 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 149

Conread position: 12-570
Cow position: chr22:12544484-12545042 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 332
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 15, 43

Conread position: 12-616
Cow position: chr22:12399353-12398749 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 217

Conread position: 12-620
Cow position: chr22:12475898-12475290 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 217

Conread position: 12-645
Cow position: chr22:12544652-12545286 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 371
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 180, 214

Conread position: 12-652
Cow position: chr22:12476318-12475678 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 217

Conread position: 12-653
Cow position: chr22:12476150-12475509 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 217

Conread position: 12-690
Cow position: chr22:12431249-12430571 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 310

Conread position: 12-691
Cow position: chr22:12544904-12545574 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 399
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 66, 77

Conread position: 12-692
Cow position: chr22:12432005-12431325 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 54

Conread position: 12-695
Cow position: chr22:12499025-12499708 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 55

Conread position: 12-695
Cow position: chr22:12499109-12499792 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 135

Conread position: 12-699
Cow position: chr22:12399689-12399002 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 65

Conread position: 12-699
Cow position: chr22:12432257-12431570 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 72

Conread position: 12-700
Cow position: chr22:11640677-11641367 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 10

Conread position: 12-700
Cow position: chr22:12431501-12430813 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 108

Conread position: 12-700
Cow position: chr22:12431669-12430981 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 221

Conread position: 12-726
Cow position: chr22:12476234-12475518 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 55

Conread position: 12-731
Cow position: chr22:12431837-12431114 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 218

Conread position: 12-732
Cow position: chr22:12399521-12398797 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 77

Conread position: 15-616
Cow position: chr22:12385510-12384907 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 61

Conread position: 15-653
Cow position: chr22:12385594-12384954 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 74

Conread position: 15-653
Cow position: chr22:14429804-14430442 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 33

Conread position: 15-699
Cow position: chr22:12475979-12475295 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 137

Conread position: 15-699
Cow position: chr22:12499280-12499964 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 136

Conread position: 15-699
Cow position: chr22:46654087-46654771 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 403
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 147, 137

Conread position: 16-369
Cow position: chr22:11666606-11666959 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 225
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 16-634
Cow position: chr22:46654172-46654791 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 52

Conread position: 16-651
Cow position: chr22:12399601-12398966 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 52

Conread position: 16-651
Cow position: chr22:14442035-14442667 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 379
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 280, 285

Conread position: 16-652
Cow position: chr22:14468050-14468685 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 65

Conread position: 16-693
Cow position: chr22:14441867-14442544 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 406
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 88, 109

Conread position: 16-699
Cow position: chr22:12476062-12475379 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 217

Conread position: 16-699
Cow position: chr22:12499197-12499880 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 206

Conread position: 17-286
Cow position: chr22:11666691-11666960 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 221, 241

Conread position: 17-533
Cow position: chr22:11701177-11701693 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 317
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 403, 397

Conread position: 17-536
Cow position: chr22:12499450-12499969 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 73

Conread position: 17-653
Cow position: chr22:14429722-14430358 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 57

Conread position: 17-692
Cow position: chr22:11640766-11641441 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 73

Conread position: 17-693
Cow position: chr22:12432420-12431744 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 398
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 62, 68

Conread position: 17-695
Cow position: chr22:12431748-12431070 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 73

Conread position: 17-695
Cow position: chr22:12432336-12431658 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 68

Conread position: 17-699
Cow position: chr22:12431412-12430730 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 457, 471

Conread position: 20-654
Cow position: chr22:14429641-14430275 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 20-655
Cow position: chr22:14429560-14430192 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 57

Conread position: 23-609
Cow position: chr22:11640856-11641442 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 389

Conread position: 23-617
Cow position: chr22:14430316-14430912 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 354
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 228, 235

Conread position: 25-695
Cow position: chr22:12431908-12431238 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 467, 460

Conread position: 28-700
Cow position: chr22:12399841-12399169 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 199

Conread position: 34-537
Cow position: chr22:11666456-11666959 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 311
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 47, 42

Conread position: 34-567
Cow position: chr22:12419018-12418485 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 34-611
Cow position: chr22:11701110-11701687 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 357
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 133, 126

Conread position: 38-699
Cow position: chr22:12385655-12384992 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 108

Conread position: 45-695
Cow position: chr22:11640626-11641276 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 45

Conread position: 46-700
Cow position: chr22:12476368-12475714 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 31

Conread position: 46-700
Cow position: chr22:12498891-12499545 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 35

Conread position: 56-702
Cow position: chr22:12432465-12431817 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 22

Conread position: 63-653
Cow position: chr22:14467928-14468519 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 74-653
Cow position: chr22:12498835-12499414 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 87

Conread position: 81-656
Cow position: chr22:12432020-12431445 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 149

Conread position: 82-699
Cow position: chr22:12385695-12385076 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 25

Conread position: 84-693
Cow position: chr22:12419321-12418695 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 355
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 233, 517

Conread position: 88-699
Cow position: chr22:12544476-12545087 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 368
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 51

Conread position: 88-731
Cow position: chr22:12476410-12475763 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 64

Conread position: 90-705
Cow position: chr22:11701082-11701699 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 30

Conread position: 119-621
Cow position: chr22:11666457-11666959 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 315
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 46, 41

Conread position: 119-691
Cow position: chr22:12419017-12418445 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 119-700
Cow position: chr22:11640616-11641197 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 54

Conread position: 157-695
Cow position: chr22:12498834-12499372 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 187

Conread position: 177-699
Cow position: chr22:14467959-14468481 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 332
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 72, 52

Conread position: 209-695
Cow position: chr22:11666463-11666949 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 113

Conread position: 213-700
Cow position: chr22:12432479-12431989 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 310
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 5, 31

Conread position: 240-632
Cow position: chr22:12498833-12499225 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 167

Conread position: 247-699
Cow position: chr22:46653983-46654435 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 274
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 54, 50

Conread position: 255-698
Cow position: chr22:14467953-14468396 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 276
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 170, 148

Conread position: 286-690
Cow position: chr22:12419018-12418614 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 289

Conread position: 391-699
Cow position: chr22:12419078-12418773 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 56, 0

Show alignments to all cow chromosomes.