Cow genome map
| Conread name: | Ss1.1-rtes03_e2.5 |
| Conread position: | 1-611 |
| Cow position: | chr23:25660127-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 227 |
| Conread position: | 1-698 |
| Cow position: | chr23:24547354-24546657 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 2-523 |
| Cow position: | chr23:25698595-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 320 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 272, 287 |
| Conread position: | 2-699 |
| Cow position: | chr23:24639277-24639974 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 3-365 |
| Cow position: | chr23:24560492-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 4-365 |
| Cow position: | chr23:25626678-25627039 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 269, 280 |
| Conread position: | 4-444 |
| Cow position: | chr23:24535898-24535458 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 161, 151 |
| Conread position: | 4-449 |
| Cow position: | chr23:24626287-24626732 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 320 |
| Conread position: | 4-573 |
| Cow position: | chr23:24522754-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 12-369 |
| Cow position: | chr23:24639707-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 216 |
| Conread position: | 12-449 |
| Cow position: | chr23:24560567-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 12-449 |
| Cow position: | chr23:25626602-25627039 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 404, 400 |
| Conread position: | 12-462 |
| Cow position: | chr23:24547091-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 227 |
| Conread position: | 12-617 |
| Cow position: | chr23:25724056-25723455 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 345 |
| Conread position: | 12-625 |
| Cow position: | chr23:24535974-24535366 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 379 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 389, 401 |
| Conread position: | 12-690 |
| Cow position: | chr23:25626269-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 307 |
| Conread position: | 12-700 |
| Cow position: | chr23:24560819-24560131 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 217 |
| Conread position: | 17-276 |
| Cow position: | chr23:25660479-25660738 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 147, 134 |
| Conread position: | 17-287 |
| Cow position: | chr23:24639796-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-288 |
| Cow position: | chr23:24654109-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 17-537 |
| Cow position: | chr23:24639544-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 17-699 |
| Cow position: | chr23:25626106-25626785 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 335 |
| Conread position: | 17-715 |
| Cow position: | chr23:25626358-25627053 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 163 |
| Conread position: | 21-621 |
| Cow position: | chr23:24639464-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 47 |
| Conread position: | 23-690 |
| Cow position: | chr23:25724129-25723465 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 398 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 394, 382 |
| Conread position: | 23-726 |
| Cow position: | chr23:25625946-25626646 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 48 |
| Conread position: | 24-430 |
| Cow position: | chr23:24522569-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 278, 273 |
| Conread position: | 24-606 |
| Cow position: | chr23:25698655-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 25-617 |
| Cow position: | chr23:24560722-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 204 |
| Conread position: | 26-653 |
| Cow position: | chr23:24522814-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 24 |
| Conread position: | 26-732 |
| Cow position: | chr23:24639217-24639926 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 36-653 |
| Cow position: | chr23:24536034-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 284 |
| Conread position: | 39-699 |
| Cow position: | chr23:24639398-24640058 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 43-617 |
| Cow position: | chr23:24626170-24626732 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 72 |
| Conread position: | 46-447 |
| Cow position: | chr23:24654054-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 46-692 |
| Cow position: | chr23:24560869-24560223 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 274 |
| Conread position: | 86-700 |
| Cow position: | chr23:24560913-24560299 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 234 |
| Conread position: | 87-691 |
| Cow position: | chr23:25698678-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 66 |
| Conread position: | 99-700 |
| Cow position: | chr23:24522825-24522229 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 35 |
| Conread position: | 103-653 |
| Cow position: | chr23:25660145-25660695 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 216 |
| Conread position: | 109-693 |
| Cow position: | chr23:24536045-24535461 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 211 |
| Conread position: | 109-726 |
| Cow position: | chr23:24547330-24546709 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 119-531 |
| Cow position: | chr23:24654043-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 123, 103 |
| Conread position: | 173-700 |
| Cow position: | chr23:25698676-25698149 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 330 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 182, 174 |
| Conread position: | 173-732 |
| Cow position: | chr23:25626010-25626572 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 187-732 |
| Cow position: | chr23:25660145-25660693 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 210 |
| Conread position: | 207-695 |
| Cow position: | chr23:24536031-24535543 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 447 |
| Conread position: | 217-692 |
| Cow position: | chr23:24626251-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 12 |
| Conread position: | 254-726 |
| Cow position: | chr23:24639193-24639669 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 158, 163 |
| Conread position: | 302-699 |
| Cow position: | chr23:24654058-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 110 |
| Conread position: | 324-691 |
| Cow position: | chr23:25724081-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 329-699 |
| Cow position: | chr23:24626276-24626646 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 331-700 |
| Cow position: | chr23:24535991-24535622 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 340-731 |
| Cow position: | chr23:25698677-25698282 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 371-630 |
| Cow position: | chr23:24654043-24654302 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 375-699 |
| Cow position: | chr23:24536031-24535707 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 147, 137 |
| Conread position: | 423-702 |
| Cow position: | chr23:25698678-25698399 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 163, 155 |
| Conread position: | 443-726 |
| Cow position: | chr23:25724129-25723842 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 455-723 |
| Cow position: | chr23:24654043-24654315 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 35, 27 |
Show alignments to all cow chromosomes.