Cow genome map

Conread name: Ss1.1-rtes03_e2.5

Conread position: 3-699
Cow position:
Alignm length: 702
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 145

Conread position: 4-281
Cow position:
Alignm length: 280
Alignm identity: 181
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 69

Conread position: 5-251
Cow position:
Alignm length: 249
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 65

Conread position: 11-441
Cow position:
Alignm length: 433
Alignm identity: 269
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 67, 75

Conread position: 12-417
Cow position:
Alignm length: 408
Alignm identity: 264
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 54, 63

Conread position: 12-533
Cow position:
Alignm length: 526
Alignm identity: 317
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 56, 73

Conread position: 12-546
Cow position:
Alignm length: 537
Alignm identity: 336
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 404, 119

Conread position: 12-646
Cow position:
Alignm length: 639
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 149

Conread position: 12-654
Cow position:
Alignm length: 648
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 146

Conread position: 12-701
Cow position:
Alignm length: 697
Alignm identity: 427
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 65, 77

Conread position: 13-502
Cow position:
Alignm length: 491
Alignm identity: 298
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 342, 335

Conread position: 13-576
Cow position:
Alignm length: 566
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 331

Conread position: 15-700
Cow position:
Alignm length: 690
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 377

Conread position: 16-524
Cow position:
Alignm length: 511
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 61

Conread position: 16-571
Cow position:
Alignm length: 564
Alignm identity: 337
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 385, 260

Conread position: 16-700
Cow position:
Alignm length: 687
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 138

Conread position: 16-731
Cow position:
Alignm length: 728
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 65

Conread position: 17-318
Cow position:
Alignm length: 303
Alignm identity: 199
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 259, 0

Conread position: 17-399
Cow position:
Alignm length: 384
Alignm identity: 238
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 50, 55

Conread position: 17-472
Cow position:
Alignm length: 462
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 59

Conread position: 17-630
Cow position:
Alignm length: 617
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 60

Conread position: 17-640
Cow position:
Alignm length: 627
Alignm identity: 376
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 65, 60

Conread position: 17-692
Cow position:
Alignm length: 682
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 66

Conread position: 17-699
Cow position:
Alignm length: 692
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 17

Conread position: 17-700
Cow position:
Alignm length: 687
Alignm identity: 416
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 218, 22

Conread position: 17-701
Cow position:
Alignm length: 690
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 471, 322

Conread position: 17-731
Cow position:
Alignm length: 721
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 211

Conread position: 19-485
Cow position:
Alignm length: 475
Alignm identity: 303
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 71, 24

Conread position: 23-483
Cow position:
Alignm length: 464
Alignm identity: 281
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 9

Conread position: 23-692
Cow position:
Alignm length: 674
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 9

Conread position: 24-576
Cow position:
Alignm length: 556
Alignm identity: 340
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 277, 272

Conread position: 24-699
Cow position:
Alignm length: 680
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 7

Conread position: 26-699
Cow position:
Alignm length: 676
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 74

Conread position: 35-692
Cow position:
Alignm length: 662
Alignm identity: 392
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 20, 42

Conread position: 45-652
Cow position:
Alignm length: 616
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 46-700
Cow position:
Alignm length: 661
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 250

Conread position: 61-575
Cow position:
Alignm length: 518
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 15

Conread position: 74-447
Cow position:
Alignm length: 376
Alignm identity: 235
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 93, 24

Conread position: 80-653
Cow position:
Alignm length: 578
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 65

Conread position: 81-732
Cow position:
Alignm length: 660
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 39

Conread position: 89-575
Cow position:
Alignm length: 491
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 259

Conread position: 110-511
Cow position:
Alignm length: 403
Alignm identity: 251
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 334, 0

Conread position: 123-683
Cow position:
Alignm length: 565
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 29

Conread position: 173-695
Cow position:
Alignm length: 527
Alignm identity: 317
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 160, 152

Conread position: 190-652
Cow position:
Alignm length: 472
Alignm identity: 302
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 45, 21

Conread position: 313-701
Cow position:
Alignm length: 393
Alignm identity: 245
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 299, 329

Conread position: 358-705
Cow position:
Alignm length: 350
Alignm identity: 211
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 5, 209

Conread position: 360-726
Cow position:
Alignm length: 370
Alignm identity: 235
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 328, 320

Show alignments to all cow chromosomes.