Cow genome map
| Conread name: | Ss1.1-rtes03_e2.5 |
| Conread position: | 3-699 |
| Cow position: | chr28:9252746-9253440 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 145 |
| Conread position: | 4-281 |
| Cow position: | chr28:7758554-7758830 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 5-251 |
| Cow position: | chr28:33210375-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 11-441 |
| Cow position: | chr28:34696149-34696579 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 12-417 |
| Cow position: | chr28:9290238-9290641 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 54, 63 |
| Conread position: | 12-533 |
| Cow position: | chr28:9299053-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 12-546 |
| Cow position: | chr28:7810418-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 336 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 404, 119 |
| Conread position: | 12-646 |
| Cow position: | chr28:7758158-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 149 |
| Conread position: | 12-654 |
| Cow position: | chr28:9253005-9253648 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 146 |
| Conread position: | 12-701 |
| Cow position: | chr28:9298720-9299394 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 427 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 65, 77 |
| Conread position: | 13-502 |
| Cow position: | chr28:34696067-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 342, 335 |
| Conread position: | 13-576 |
| Cow position: | chr28:34695983-34696546 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 331 |
| Conread position: | 15-700 |
| Cow position: | chr28:7757489-7758176 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 377 |
| Conread position: | 16-524 |
| Cow position: | chr28:7757826-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 16-571 |
| Cow position: | chr28:11333727-11333171 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 337 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 385, 260 |
| Conread position: | 16-700 |
| Cow position: | chr28:7758078-7758746 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 138 |
| Conread position: | 16-731 |
| Cow position: | chr28:7757406-7758125 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 17-318 |
| Cow position: | chr28:33210303-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 259, 0 |
| Conread position: | 17-399 |
| Cow position: | chr28:9290327-9290707 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 17-472 |
| Cow position: | chr28:7758399-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 17-630 |
| Cow position: | chr28:7810339-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 17-640 |
| Cow position: | chr28:11334146-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 376 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 17-692 |
| Cow position: | chr28:7757659-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 17-699 |
| Cow position: | chr28:9289911-9290587 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 17-700 |
| Cow position: | chr28:9298643-9299309 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 416 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 218, 22 |
| Conread position: | 17-701 |
| Cow position: | chr28:7757995-7758665 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 471, 322 |
| Conread position: | 17-731 |
| Cow position: | chr28:7757575-7758293 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 211 |
| Conread position: | 19-485 |
| Cow position: | chr28:34679565-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 303 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 23-483 |
| Cow position: | chr28:9299220-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 23-692 |
| Cow position: | chr28:9252933-9253601 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 24-576 |
| Cow position: | chr28:34673353-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 340 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 277, 272 |
| Conread position: | 24-699 |
| Cow position: | chr28:11334053-11333386 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 26-699 |
| Cow position: | chr28:7757254-7757921 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 74 |
| Conread position: | 35-692 |
| Cow position: | chr28:11334212-11333555 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 392 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 45-652 |
| Cow position: | chr28:7757351-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 46-700 |
| Cow position: | chr28:7810284-7810931 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 250 |
| Conread position: | 61-575 |
| Cow position: | chr28:9290123-9290631 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 74-447 |
| Cow position: | chr28:9299188-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 80-653 |
| Cow position: | chr28:9290058-9290625 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 81-732 |
| Cow position: | chr28:7757141-7757789 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 89-575 |
| Cow position: | chr28:7758387-7758873 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 259 |
| Conread position: | 110-511 |
| Cow position: | chr28:33210228-33210630 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 334, 0 |
| Conread position: | 123-683 |
| Cow position: | chr28:9298580-9299136 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 173-695 |
| Cow position: | chr28:34695891-34696413 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 160, 152 |
| Conread position: | 190-652 |
| Cow position: | chr28:34679562-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 313-701 |
| Cow position: | chr28:33210263-33210654 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 299, 329 |
| Conread position: | 358-705 |
| Cow position: | chr28:33210223-33210571 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 209 |
| Conread position: | 360-726 |
| Cow position: | chr28:34673353-34673721 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 328, 320 |
Show alignments to all cow chromosomes.