Cow genome map
| Conread name: | Ss1.1-rtes03_e2.5 |
| Conread position: | 3-620 |
| Cow position: | chr3:62742838-62743435 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 4-447 |
| Cow position: | chr3:62722011-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-531 |
| Cow position: | chr3:68027238-68027763 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 331 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 161, 151 |
| Conread position: | 5-343 |
| Cow position: | chr3:77350933-77350598 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 12-622 |
| Cow position: | chr3:62742432-62743033 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 12-623 |
| Cow position: | chr3:68027162-68027771 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 229 |
| Conread position: | 12-623 |
| Cow position: | chr3:68045755-68046364 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 78 |
| Conread position: | 12-653 |
| Cow position: | chr3:68027078-68027719 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 307 |
| Conread position: | 12-693 |
| Cow position: | chr3:68045671-68046352 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 216 |
| Conread position: | 12-699 |
| Cow position: | chr3:62722255-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 72 |
| Conread position: | 13-620 |
| Cow position: | chr3:62742934-62743517 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 368 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 225, 5 |
| Conread position: | 16-651 |
| Cow position: | chr3:62742352-62742983 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 135 |
| Conread position: | 16-699 |
| Cow position: | chr3:62742767-62743429 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 130 |
| Conread position: | 17-532 |
| Cow position: | chr3:62722082-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 212 |
| Conread position: | 18-700 |
| Cow position: | chr3:62742687-62743346 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 64 |
| Conread position: | 24-653 |
| Cow position: | chr3:68045599-68046228 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 30-600 |
| Cow position: | chr3:20194726-20195296 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 38-700 |
| Cow position: | chr3:68027020-68027682 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 38-726 |
| Cow position: | chr3:77351312-77350633 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 113 |
| Conread position: | 41-683 |
| Cow position: | chr3:62722310-62721668 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 120 |
| Conread position: | 48-700 |
| Cow position: | chr3:62722387-62721735 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 83-651 |
| Cow position: | chr3:68045574-68046142 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 347 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 76, 82 |
| Conread position: | 89-433 |
| Cow position: | chr3:77350933-77350592 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 245, 233 |
| Conread position: | 167-695 |
| Cow position: | chr3:68045574-68046102 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 249-699 |
| Cow position: | chr3:62742250-62742696 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 169, 99 |
| Conread position: | 251-695 |
| Cow position: | chr3:68026981-68027425 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 317-651 |
| Cow position: | chr3:68026963-68027297 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 320-653 |
| Cow position: | chr3:68045559-68045892 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 91, 97 |
Show alignments to all cow chromosomes.