Cow genome map

Conread name: Ss1.1-rtes03_e2.5

Conread position: 1-317
Cow position:
Alignm length: 321
Alignm identity: 208
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 86, 69

Conread position: 1-477
Cow position:
Alignm length: 483
Alignm identity: 300
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 80, 65

Conread position: 1-651
Cow position:
Alignm length: 662
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 161

Conread position: 1-651
Cow position:
Alignm length: 659
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 173

Conread position: 1-652
Cow position:
Alignm length: 659
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 157

Conread position: 1-655
Cow position:
Alignm length: 665
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 85

Conread position: 1-658
Cow position:
Alignm length: 665
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 163

Conread position: 2-577
Cow position:
Alignm length: 579
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 304

Conread position: 2-617
Cow position:
Alignm length: 619
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 226

Conread position: 2-653
Cow position:
Alignm length: 661
Alignm identity: 403
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 93, 69

Conread position: 3-651
Cow position:
Alignm length: 659
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 29

Conread position: 3-699
Cow position:
Alignm length: 700
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 409

Conread position: 4-233
Cow position:
Alignm length: 230
Alignm identity: 149
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 224, 0

Conread position: 4-615
Cow position:
Alignm length: 614
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 340

Conread position: 4-630
Cow position:
Alignm length: 638
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 91

Conread position: 4-652
Cow position:
Alignm length: 656
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 107

Conread position: 4-700
Cow position:
Alignm length: 703
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 79

Conread position: 5-290
Cow position:
Alignm length: 289
Alignm identity: 183
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 65

Conread position: 5-477
Cow position:
Alignm length: 478
Alignm identity: 294
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 70, 82

Conread position: 5-518
Cow position:
Alignm length: 516
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 407

Conread position: 11-570
Cow position:
Alignm length: 568
Alignm identity: 341
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 69

Conread position: 11-662
Cow position:
Alignm length: 657
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 140

Conread position: 12-232
Cow position:
Alignm length: 223
Alignm identity: 154
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 61

Conread position: 12-576
Cow position:
Alignm length: 567
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 36

Conread position: 12-653
Cow position:
Alignm length: 646
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 307

Conread position: 12-656
Cow position:
Alignm length: 650
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 71

Conread position: 12-690
Cow position:
Alignm length: 683
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 72

Conread position: 12-699
Cow position:
Alignm length: 691
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 144

Conread position: 12-700
Cow position:
Alignm length: 697
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 55

Conread position: 12-702
Cow position:
Alignm length: 694
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 126

Conread position: 12-731
Cow position:
Alignm length: 729
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 78

Conread position: 12-732
Cow position:
Alignm length: 727
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 285

Conread position: 15-651
Cow position:
Alignm length: 646
Alignm identity: 399
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 75, 57

Conread position: 15-695
Cow position:
Alignm length: 683
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 146

Conread position: 15-699
Cow position:
Alignm length: 699
Alignm identity: 415
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 67, 62

Conread position: 16-570
Cow position:
Alignm length: 565
Alignm identity: 348
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 55, 59

Conread position: 16-579
Cow position:
Alignm length: 570
Alignm identity: 346
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 49, 56

Conread position: 16-653
Cow position:
Alignm length: 650
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 54

Conread position: 16-699
Cow position:
Alignm length: 687
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 389

Conread position: 16-700
Cow position:
Alignm length: 690
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 134

Conread position: 16-732
Cow position:
Alignm length: 730
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 74

Conread position: 17-653
Cow position:
Alignm length: 643
Alignm identity: 387
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 389, 396

Conread position: 17-699
Cow position:
Alignm length: 688
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 283

Conread position: 20-626
Cow position:
Alignm length: 616
Alignm identity: 382
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 68, 50

Conread position: 20-653
Cow position:
Alignm length: 635
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 558, 385

Conread position: 21-651
Cow position:
Alignm length: 643
Alignm identity: 392
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 59

Conread position: 22-652
Cow position:
Alignm length: 641
Alignm identity: 395
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 46, 58

Conread position: 22-652
Cow position:
Alignm length: 631
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 22-653
Cow position:
Alignm length: 642
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 133

Conread position: 23-699
Cow position:
Alignm length: 680
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 9

Conread position: 35-700
Cow position:
Alignm length: 669
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 540, 547

Conread position: 36-570
Cow position:
Alignm length: 538
Alignm identity: 311
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 60, 64

Conread position: 46-673
Cow position:
Alignm length: 633
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 40

Conread position: 47-653
Cow position:
Alignm length: 613
Alignm identity: 371
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 127, 112

Conread position: 47-692
Cow position:
Alignm length: 650
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 169

Conread position: 48-653
Cow position:
Alignm length: 613
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 185

Conread position: 48-657
Cow position:
Alignm length: 615
Alignm identity: 361
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 116, 102

Conread position: 72-732
Cow position:
Alignm length: 668
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 15

Conread position: 88-477
Cow position:
Alignm length: 392
Alignm identity: 233
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 263, 258

Conread position: 88-732
Cow position:
Alignm length: 662
Alignm identity: 405
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 73, 77

Conread position: 102-653
Cow position:
Alignm length: 561
Alignm identity: 347
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 100, 108

Conread position: 104-700
Cow position:
Alignm length: 602
Alignm identity: 368
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 227, 215

Conread position: 106-653
Cow position:
Alignm length: 556
Alignm identity: 340
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 66, 50

Conread position: 113-670
Cow position:
Alignm length: 562
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 52

Conread position: 168-651
Cow position:
Alignm length: 486
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 5

Conread position: 168-699
Cow position:
Alignm length: 536
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 35

Conread position: 190-655
Cow position:
Alignm length: 473
Alignm identity: 297
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 61, 43

Conread position: 313-699
Cow position:
Alignm length: 388
Alignm identity: 231
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 265, 269

Conread position: 332-692
Cow position:
Alignm length: 365
Alignm identity: 231
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 21, 13

Conread position: 339-731
Cow position:
Alignm length: 401
Alignm identity: 243
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 8, 54

Show alignments to all cow chromosomes.