Cow genome map
| Conread name: | Ss1.1-rtes03_e2.5 |
| Conread position: | 1-317 |
| Cow position: | chr7:8325800-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 86, 69 |
| Conread position: | 1-477 |
| Cow position: | chr7:8325632-8326108 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 1-651 |
| Cow position: | chr7:8243445-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 161 |
| Conread position: | 1-651 |
| Cow position: | chr7:8325128-8325778 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 173 |
| Conread position: | 1-652 |
| Cow position: | chr7:8324792-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 157 |
| Conread position: | 1-655 |
| Cow position: | chr7:8243194-8243847 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 1-658 |
| Cow position: | chr7:8325380-8326037 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 163 |
| Conread position: | 2-577 |
| Cow position: | chr7:1014915-1015492 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 304 |
| Conread position: | 2-617 |
| Cow position: | chr7:3180177-3180792 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 226 |
| Conread position: | 2-653 |
| Cow position: | chr7:8243279-8243929 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 403 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 3-651 |
| Cow position: | chr7:1439614-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 3-699 |
| Cow position: | chr7:3179926-3180622 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 409 |
| Conread position: | 4-233 |
| Cow position: | chr7:18390560-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 4-615 |
| Cow position: | chr7:1014833-1015444 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 340 |
| Conread position: | 4-630 |
| Cow position: | chr7:8277742-8278368 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 91 |
| Conread position: | 4-652 |
| Cow position: | chr7:8277406-8278054 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 107 |
| Conread position: | 4-700 |
| Cow position: | chr7:42879214-42878518 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 79 |
| Conread position: | 5-290 |
| Cow position: | chr7:11434508-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 5-477 |
| Cow position: | chr7:11434753-11434288 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 70, 82 |
| Conread position: | 5-518 |
| Cow position: | chr7:11600956-11600443 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 407 |
| Conread position: | 11-570 |
| Cow position: | chr7:8278169-8278719 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 11-662 |
| Cow position: | chr7:3180018-3180668 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 140 |
| Conread position: | 12-232 |
| Cow position: | chr7:1440044-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 12-576 |
| Cow position: | chr7:18390232-18390796 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 36 |
| Conread position: | 12-653 |
| Cow position: | chr7:3179851-3180492 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 307 |
| Conread position: | 12-656 |
| Cow position: | chr7:42878870-42878225 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 12-690 |
| Cow position: | chr7:11601117-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 72 |
| Conread position: | 12-699 |
| Cow position: | chr7:3179767-3180454 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 12-700 |
| Cow position: | chr7:3180103-3180791 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 55 |
| Conread position: | 12-702 |
| Cow position: | chr7:1014757-1015447 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 126 |
| Conread position: | 12-731 |
| Cow position: | chr7:1014673-1015396 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 78 |
| Conread position: | 12-732 |
| Cow position: | chr7:42879038-42878315 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 285 |
| Conread position: | 15-651 |
| Cow position: | chr7:8277921-8278555 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 399 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 57 |
| Conread position: | 15-695 |
| Cow position: | chr7:42879371-42878691 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 146 |
| Conread position: | 15-699 |
| Cow position: | chr7:1439459-1440143 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 415 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 16-570 |
| Cow position: | chr7:8278006-8278558 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 348 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 16-579 |
| Cow position: | chr7:1439715-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 346 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 16-653 |
| Cow position: | chr7:8325479-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 16-699 |
| Cow position: | chr7:42879118-42878435 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 389 |
| Conread position: | 16-700 |
| Cow position: | chr7:1014431-1015109 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 134 |
| Conread position: | 16-732 |
| Cow position: | chr7:11601197-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 17-653 |
| Cow position: | chr7:8325228-8325864 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 387 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 389, 396 |
| Conread position: | 17-699 |
| Cow position: | chr7:1014348-1015024 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 283 |
| Conread position: | 20-626 |
| Cow position: | chr7:11434822-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 382 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 20-653 |
| Cow position: | chr7:1014267-1014894 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 385 |
| Conread position: | 21-651 |
| Cow position: | chr7:8243130-8243759 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 392 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 22-652 |
| Cow position: | chr7:8243382-8244010 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 395 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 22-652 |
| Cow position: | chr7:18390160-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 22-653 |
| Cow position: | chr7:8324729-8325360 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 133 |
| Conread position: | 23-699 |
| Cow position: | chr7:42879277-42878603 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 35-700 |
| Cow position: | chr7:3179706-3180371 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 547 |
| Conread position: | 36-570 |
| Cow position: | chr7:28846433-28846967 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 311 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 46-673 |
| Cow position: | chr7:42879424-42878797 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 47-653 |
| Cow position: | chr7:8277365-8277971 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 371 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 127, 112 |
| Conread position: | 47-692 |
| Cow position: | chr7:18390099-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 48-653 |
| Cow position: | chr7:8277534-8278139 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 185 |
| Conread position: | 48-657 |
| Cow position: | chr7:8242821-8243429 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 361 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 72-732 |
| Cow position: | chr7:1014650-1015312 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 15 |
| Conread position: | 88-477 |
| Cow position: | chr7:1438311-1438700 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 263, 258 |
| Conread position: | 88-732 |
| Cow position: | chr7:1439448-1440097 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 405 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 73, 77 |
| Conread position: | 102-653 |
| Cow position: | chr7:11434824-11434280 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 347 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 100, 108 |
| Conread position: | 104-700 |
| Cow position: | chr7:1014267-1014857 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 368 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 227, 215 |
| Conread position: | 106-653 |
| Cow position: | chr7:8277256-8277803 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 340 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 113-670 |
| Cow position: | chr7:18389997-18390552 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 168-651 |
| Cow position: | chr7:11601212-11600730 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 5 |
| Conread position: | 168-699 |
| Cow position: | chr7:3179671-3180202 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 190-655 |
| Cow position: | chr7:8324729-8325194 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 297 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 313-699 |
| Cow position: | chr7:1014224-1014610 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 265, 269 |
| Conread position: | 332-692 |
| Cow position: | chr7:18390048-18390408 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 339-731 |
| Cow position: | chr7:42879384-42878987 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 54 |
Show alignments to all cow chromosomes.