Cow genome map
| Conread name: | Ss1.1-rtes03_e2.5 |
| Conread position: | 2-700 |
| Cow position: | chrX:25325443-25324745 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 406 |
| Conread position: | 5-306 |
| Cow position: | chrX:14181243-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 11-640 |
| Cow position: | chrX:14181573-14180944 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 12-289 |
| Cow position: | chrX:29044938-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-381 |
| Cow position: | chrX:25310212-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 140, 145 |
| Conread position: | 12-471 |
| Cow position: | chrX:25324677-25324220 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 0 |
| Conread position: | 12-531 |
| Cow position: | chrX:25324761-25324242 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 12-531 |
| Cow position: | chrX:29045190-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 12-699 |
| Cow position: | chrX:25325265-25324578 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 149 |
| Conread position: | 12-699 |
| Cow position: | chrX:25325685-25324998 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 77 |
| Conread position: | 12-699 |
| Cow position: | chrX:29045757-29045091 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 319 |
| Conread position: | 12-726 |
| Cow position: | chrX:25325097-25324379 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 400 |
| Conread position: | 12-731 |
| Cow position: | chrX:25309792-25310515 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 390 |
| Conread position: | 14-699 |
| Cow position: | chrX:25325599-25324914 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 467 |
| Conread position: | 15-699 |
| Cow position: | chrX:25325514-25324830 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 15-700 |
| Cow position: | chrX:25325766-25325081 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 62 |
| Conread position: | 16-549 |
| Cow position: | chrX:25310048-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 16-615 |
| Cow position: | chrX:29045270-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 16-617 |
| Cow position: | chrX:25324841-25324240 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 145 |
| Conread position: | 16-655 |
| Cow position: | chrX:12627345-12627982 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 378 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 325, 158 |
| Conread position: | 16-692 |
| Cow position: | chrX:25325009-25324333 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 60 |
| Conread position: | 16-700 |
| Cow position: | chrX:25324925-25324241 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 376 |
| Conread position: | 16-731 |
| Cow position: | chrX:25325345-25324626 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 213 |
| Conread position: | 17-557 |
| Cow position: | chrX:13826705-13826165 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 325 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 433, 428 |
| Conread position: | 17-630 |
| Cow position: | chrX:13826873-13826260 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 17-639 |
| Cow position: | chrX:25309965-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 17-653 |
| Cow position: | chrX:25309713-25310349 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 134 |
| Conread position: | 23-391 |
| Cow position: | chrX:14181309-14180941 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-576 |
| Cow position: | chrX:13826783-13826230 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 256 |
| Conread position: | 26-702 |
| Cow position: | chrX:13826948-13826273 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 405 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 38-699 |
| Cow position: | chrX:29045332-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 123 |
| Conread position: | 84-732 |
| Cow position: | chrX:25309696-25310347 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 413 |
| Conread position: | 89-474 |
| Cow position: | chrX:14181327-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 89-700 |
| Cow position: | chrX:25325776-25325165 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 72 |
| Conread position: | 95-479 |
| Cow position: | chrX:29045758-29045374 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 143, 134 |
| Conread position: | 118-684 |
| Cow position: | chrX:29045336-29044768 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 361 |
| Conread position: | 124-723 |
| Cow position: | chrX:13826934-13826331 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 357 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 524, 517 |
| Conread position: | 171-558 |
| Cow position: | chrX:14181329-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 247, 238 |
| Conread position: | 181-645 |
| Cow position: | chrX:29045840-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 194-715 |
| Cow position: | chrX:13826948-13826428 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 205-726 |
| Cow position: | chrX:29045333-29044808 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 143 |
| Conread position: | 332-701 |
| Cow position: | chrX:29045773-29045404 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 352-663 |
| Cow position: | chrX:29045837-29045526 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 22 |
Show alignments to all cow chromosomes.