Cow genome map
| Conread name: | Ss1.1-rtes08_i19.5 |
| Conread position: | 738-989 |
| Cow position: | chr11:1886027-1886287 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 758-996 |
| Cow position: | chr11:41403099-41402851 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 7, 11 |
| Conread position: | 760-996 |
| Cow position: | chr11:20365459-20365218 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 151 |
| Conread position: | 761-979 |
| Cow position: | chr11:48099811-48099591 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 761-996 |
| Cow position: | chr11:33116123-33116356 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 762-989 |
| Cow position: | chr11:7558643-7558425 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 762-989 |
| Cow position: | chr11:33204340-33204564 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 26 |
| Conread position: | 762-989 |
| Cow position: | chr11:38511456-38511693 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 763-943 |
| Cow position: | chr11:81044465-81044650 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 763-984 |
| Cow position: | chr11:40593591-40593366 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 763-995 |
| Cow position: | chr11:86397252-86397011 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 764-933 |
| Cow position: | chr11:15511442-15511266 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 764-968 |
| Cow position: | chr11:64847891-64848105 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 764-986 |
| Cow position: | chr11:72851752-72851979 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 764-989 |
| Cow position: | chr11:60967889-60967660 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 764-992 |
| Cow position: | chr11:42237516-42237740 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 764-993 |
| Cow position: | chr11:38846267-38846030 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 764-995 |
| Cow position: | chr11:58397796-58397565 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 764-996 |
| Cow position: | chr11:50018128-50017890 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 765-986 |
| Cow position: | chr11:3392657-3392879 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 765-989 |
| Cow position: | chr11:34809406-34809189 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 766-941 |
| Cow position: | chr11:78992288-78992112 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 767-986 |
| Cow position: | chr11:24655738-24655513 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 767-996 |
| Cow position: | chr11:58557202-58556974 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 792-985 |
| Cow position: | chr11:67856242-67856039 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 792-986 |
| Cow position: | chr11:26334123-26334319 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 793-992 |
| Cow position: | chr11:42791230-42791439 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 112 |
| Conread position: | 793-992 |
| Cow position: | chr11:62478110-62478318 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 132 |
| Conread position: | 793-996 |
| Cow position: | chr11:49707275-49707065 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 795-989 |
| Cow position: | chr11:12160864-12160660 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 796-986 |
| Cow position: | chr11:4331032-4331232 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 796-996 |
| Cow position: | chr11:71187206-71187409 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 804-996 |
| Cow position: | chr11:12314482-12314284 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 21, 131 |
| Conread position: | 820-962 |
| Cow position: | chr11:20410323-20410174 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 820-986 |
| Cow position: | chr11:21851954-21852122 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 151 |
| Conread position: | 820-989 |
| Cow position: | chr11:73360549-73360373 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 148 |
| Conread position: | 820-996 |
| Cow position: | chr11:40456277-40456091 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 820-996 |
| Cow position: | chr11:63173324-63173506 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 821-962 |
| Cow position: | chr11:65316540-65316395 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 137 |
| Conread position: | 821-985 |
| Cow position: | chr11:20590575-20590407 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 12, 80 |
| Conread position: | 821-986 |
| Cow position: | chr11:10987257-10987417 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 821-989 |
| Cow position: | chr11:5045037-5045212 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 821-996 |
| Cow position: | chr11:34911891-34911713 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 821-996 |
| Cow position: | chr11:35277546-35277730 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 821-996 |
| Cow position: | chr11:35466779-35466958 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 826-989 |
| Cow position: | chr11:75396667-75396836 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 829-945 |
| Cow position: | chr11:29832744-29832862 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 829-989 |
| Cow position: | chr11:64459959-64459793 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 154 |
| Conread position: | 833-986 |
| Cow position: | chr11:53588743-53588586 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 851-989 |
| Cow position: | chr11:36633372-36633232 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 853-962 |
| Cow position: | chr11:81577885-81577994 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.