Cow genome map
| Conread name: | Ss1.1-rtes08_i19.5 |
| Conread position: | 745-962 |
| Cow position: | chr13:42368196-42368417 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 757-995 |
| Cow position: | chr13:25921738-25921496 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 758-985 |
| Cow position: | chr13:16135736-16135972 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 760-975 |
| Cow position: | chr13:16927218-16927001 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 762-989 |
| Cow position: | chr13:31806899-31806674 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 762-995 |
| Cow position: | chr13:21279170-21279412 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 146 |
| Conread position: | 762-995 |
| Cow position: | chr13:56297925-56297682 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 205 |
| Conread position: | 764-985 |
| Cow position: | chr13:29726454-29726223 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 764-991 |
| Cow position: | chr13:15788334-15788558 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 764-992 |
| Cow position: | chr13:39745343-39745581 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 764-995 |
| Cow position: | chr13:35694090-35694328 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 765-942 |
| Cow position: | chr13:4074474-4074293 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 766-989 |
| Cow position: | chr13:15372158-15371917 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 767-989 |
| Cow position: | chr13:27382802-27382561 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 789-971 |
| Cow position: | chr13:4184687-4184502 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 13, 175 |
| Conread position: | 790-984 |
| Cow position: | chr13:32201703-32201901 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 793-996 |
| Cow position: | chr13:6187581-6187364 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 799-986 |
| Cow position: | chr13:56901949-56901754 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 181 |
| Conread position: | 804-985 |
| Cow position: | chr13:15656705-15656894 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 807-995 |
| Cow position: | chr13:20855974-20855775 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 814-995 |
| Cow position: | chr13:55458738-55458923 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 148 |
| Conread position: | 818-986 |
| Cow position: | chr13:9391982-9392142 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 819-996 |
| Cow position: | chr13:47571600-47571791 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 821-942 |
| Cow position: | chr13:41687056-41686932 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 821-985 |
| Cow position: | chr13:23798936-23798772 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 138 |
| Conread position: | 821-986 |
| Cow position: | chr13:20330742-20330907 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 148 |
| Conread position: | 821-986 |
| Cow position: | chr13:51747090-51746919 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 32, 163 |
| Conread position: | 821-989 |
| Cow position: | chr13:12508227-12508052 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 821-989 |
| Cow position: | chr13:40508545-40508371 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 821-992 |
| Cow position: | chr13:16102429-16102597 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 821-992 |
| Cow position: | chr13:34082619-34082446 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 821-995 |
| Cow position: | chr13:42782549-42782372 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 143 |
| Conread position: | 821-996 |
| Cow position: | chr13:14069439-14069261 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 821-996 |
| Cow position: | chr13:55778757-55778584 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 822-989 |
| Cow position: | chr13:5909101-5909276 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 9, 163 |
| Conread position: | 822-990 |
| Cow position: | chr13:21292633-21292463 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 855-986 |
| Cow position: | chr13:47329074-47328949 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.