Cow genome map
| Conread name: | Ss1.1-rtes08_i19.5 |
| Conread position: | 757-986 |
| Cow position: | chr3:74227435-74227661 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 762-936 |
| Cow position: | chr3:2174118-2173937 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 762-962 |
| Cow position: | chr3:1416514-1416718 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 763-986 |
| Cow position: | chr3:44896051-44895827 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 763-986 |
| Cow position: | chr3:47623830-47623598 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 763-990 |
| Cow position: | chr3:47473593-47473355 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 763-995 |
| Cow position: | chr3:5415153-5415396 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 763-996 |
| Cow position: | chr3:77778815-77778583 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 764-947 |
| Cow position: | chr3:50593576-50593768 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 764-950 |
| Cow position: | chr3:43345914-43346105 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 150 |
| Conread position: | 764-973 |
| Cow position: | chr3:52153925-52154136 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 764-986 |
| Cow position: | chr3:69186930-69187153 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 764-996 |
| Cow position: | chr3:42925525-42925293 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 765-962 |
| Cow position: | chr3:32764733-32764536 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 765-993 |
| Cow position: | chr3:76961148-76960910 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 766-984 |
| Cow position: | chr3:80294572-80294356 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 766-989 |
| Cow position: | chr3:59811216-59811449 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 769-996 |
| Cow position: | chr3:73834246-73834479 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 773-992 |
| Cow position: | chr3:12618290-12618062 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 781-996 |
| Cow position: | chr3:38335532-38335320 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 129 |
| Conread position: | 785-989 |
| Cow position: | chr3:15566232-15566445 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 181 |
| Conread position: | 790-996 |
| Cow position: | chr3:33614263-33614467 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 793-962 |
| Cow position: | chr3:60576499-60576323 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 123 |
| Conread position: | 795-996 |
| Cow position: | chr3:65385703-65385481 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 799-962 |
| Cow position: | chr3:45845700-45845871 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 153 |
| Conread position: | 810-989 |
| Cow position: | chr3:64079912-64079727 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 820-995 |
| Cow position: | chr3:59608967-59608786 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 821-962 |
| Cow position: | chr3:34588564-34588708 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 124 |
| Conread position: | 821-985 |
| Cow position: | chr3:29553240-29553070 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 162 |
| Conread position: | 821-987 |
| Cow position: | chr3:71228260-71228433 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 149 |
| Conread position: | 821-989 |
| Cow position: | chr3:67655401-67655229 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 111 |
| Conread position: | 821-989 |
| Cow position: | chr3:71500532-71500361 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 11, 159 |
| Conread position: | 821-992 |
| Cow position: | chr3:43305533-43305357 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 821-992 |
| Cow position: | chr3:45634782-45634958 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 161 |
| Conread position: | 821-993 |
| Cow position: | chr3:53246141-53245955 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 821-995 |
| Cow position: | chr3:62023898-62023718 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 821-996 |
| Cow position: | chr3:76189682-76189504 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 128 |
| Conread position: | 824-996 |
| Cow position: | chr3:26383422-26383244 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 851-993 |
| Cow position: | chr3:54884137-54883989 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 853-989 |
| Cow position: | chr3:67190929-67190793 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 107, 31 |
Show alignments to all cow chromosomes.