Cow genome map
| Conread name: | Ss1.1-rtes08_i19.5 |
| Conread position: | 753-954 |
| Cow position: | chr5:71054861-71055066 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 758-962 |
| Cow position: | chr5:28860175-28860388 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 758-989 |
| Cow position: | chr5:53629463-53629703 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 758-992 |
| Cow position: | chr5:12310046-12310287 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 758-995 |
| Cow position: | chr5:55270199-55270439 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 759-990 |
| Cow position: | chr5:15835200-15834962 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 760-953 |
| Cow position: | chr5:66613715-66613519 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 761-986 |
| Cow position: | chr5:40553969-40554201 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 764-942 |
| Cow position: | chr5:39437291-39437475 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 764-986 |
| Cow position: | chr5:35085680-35085460 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 764-989 |
| Cow position: | chr5:65092767-65092997 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 764-994 |
| Cow position: | chr5:10042625-10042859 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 764-994 |
| Cow position: | chr5:26990982-26990751 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 764-995 |
| Cow position: | chr5:39793756-39793525 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 766-986 |
| Cow position: | chr5:7925497-7925720 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 766-992 |
| Cow position: | chr5:68845055-68845276 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 766-996 |
| Cow position: | chr5:47758344-47758583 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 767-989 |
| Cow position: | chr5:5229857-5229629 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 768-996 |
| Cow position: | chr5:75322190-75321953 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 771-985 |
| Cow position: | chr5:27476960-27476751 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 772-961 |
| Cow position: | chr5:10914901-10915091 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 782-996 |
| Cow position: | chr5:3459842-3460065 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 790-990 |
| Cow position: | chr5:12178001-12177794 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 102 |
| Conread position: | 793-989 |
| Cow position: | chr5:24609631-24609423 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 196 |
| Conread position: | 796-965 |
| Cow position: | chr5:2179545-2179723 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 798-991 |
| Cow position: | chr5:33060630-33060434 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 800-986 |
| Cow position: | chr5:71725719-71725914 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 177 |
| Conread position: | 821-986 |
| Cow position: | chr5:28410621-28410452 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 16, 146 |
| Conread position: | 821-986 |
| Cow position: | chr5:29057294-29057463 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 149 |
| Conread position: | 821-989 |
| Cow position: | chr5:36722776-36722608 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 821-993 |
| Cow position: | chr5:35612744-35612565 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 821-996 |
| Cow position: | chr5:14306776-14306591 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 822-986 |
| Cow position: | chr5:66879128-66878962 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 823-968 |
| Cow position: | chr5:54889027-54889176 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 146 |
| Conread position: | 829-986 |
| Cow position: | chr5:47384112-47383950 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 851-996 |
| Cow position: | chr5:29511064-29511222 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 853-989 |
| Cow position: | chr5:5397586-5397724 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.