Cow genome map
| Conread name: | Ss1.1-rtes08_i19.5 |
| Conread position: | 745-996 |
| Cow position: | chr6:46661066-46660805 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 749-942 |
| Cow position: | chr6:57541935-57541737 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 762-992 |
| Cow position: | chr6:12924741-12924977 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 763-996 |
| Cow position: | chr6:6480669-6480424 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 764-969 |
| Cow position: | chr6:32536633-32536852 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 765-962 |
| Cow position: | chr6:5560863-5561071 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 765-963 |
| Cow position: | chr6:44707117-44706917 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 765-965 |
| Cow position: | chr6:58969488-58969697 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 766-942 |
| Cow position: | chr6:48662323-48662504 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 766-962 |
| Cow position: | chr6:8367855-8367657 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 766-971 |
| Cow position: | chr6:29110642-29110851 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 766-989 |
| Cow position: | chr6:57367927-57368159 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 767-989 |
| Cow position: | chr6:50875279-50875506 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 767-995 |
| Cow position: | chr6:35274063-35273823 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 768-992 |
| Cow position: | chr6:53392548-53392314 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 769-996 |
| Cow position: | chr6:11754077-11754315 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 790-989 |
| Cow position: | chr6:5849643-5849433 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 793-986 |
| Cow position: | chr6:50979667-50979466 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 177 |
| Conread position: | 796-962 |
| Cow position: | chr6:49221398-49221573 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 796-995 |
| Cow position: | chr6:46885944-46886162 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 797-987 |
| Cow position: | chr6:51031113-51030922 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 798-986 |
| Cow position: | chr6:50799810-50800007 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 821-962 |
| Cow position: | chr6:62095642-62095785 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 821-989 |
| Cow position: | chr6:6520937-6520763 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 821-989 |
| Cow position: | chr6:38275242-38275071 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 821-992 |
| Cow position: | chr6:57339411-57339230 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 821-995 |
| Cow position: | chr6:16752180-16751999 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 822-992 |
| Cow position: | chr6:68278343-68278167 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 822-996 |
| Cow position: | chr6:7202508-7202688 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 823-989 |
| Cow position: | chr6:49349770-49349597 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 829-989 |
| Cow position: | chr6:9789632-9789470 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 832-986 |
| Cow position: | chr6:60176885-60176725 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 856-992 |
| Cow position: | chr6:28182217-28182078 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 50 |
Show alignments to all cow chromosomes.