Cow genome map
| Conread name: | Ss1.1-rtes08_i19.5 |
| Conread position: | 732-996 |
| Cow position: | chr9:8039999-8040272 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 755-962 |
| Cow position: | chr9:4514610-4514398 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 757-992 |
| Cow position: | chr9:51578381-51578136 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 758-980 |
| Cow position: | chr9:18118733-18118962 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 64 |
| Conread position: | 762-992 |
| Cow position: | chr9:3089658-3089890 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 763-996 |
| Cow position: | chr9:24112173-24111937 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 25 |
| Conread position: | 764-962 |
| Cow position: | chr9:44688997-44688792 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 764-962 |
| Cow position: | chr9:48791919-48792129 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 129 |
| Conread position: | 764-989 |
| Cow position: | chr9:45376294-45376054 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 764-996 |
| Cow position: | chr9:23867173-23866944 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 764-996 |
| Cow position: | chr9:34086329-34086092 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 198 |
| Conread position: | 765-984 |
| Cow position: | chr9:52423320-52423097 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 765-996 |
| Cow position: | chr9:7076907-7077147 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 124 |
| Conread position: | 766-996 |
| Cow position: | chr9:10734331-10734575 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 767-962 |
| Cow position: | chr9:60792420-60792220 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 768-996 |
| Cow position: | chr9:33247457-33247690 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 788-942 |
| Cow position: | chr9:7778342-7778181 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 33, 6 |
| Conread position: | 788-996 |
| Cow position: | chr9:26036875-26037084 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 792-953 |
| Cow position: | chr9:53112408-53112574 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 792-992 |
| Cow position: | chr9:21380584-21380375 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 793-989 |
| Cow position: | chr9:35599365-35599167 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 793-995 |
| Cow position: | chr9:52392375-52392589 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 793-996 |
| Cow position: | chr9:8633187-8633407 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 83 |
| Conread position: | 796-942 |
| Cow position: | chr9:50381537-50381693 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 796-962 |
| Cow position: | chr9:43324845-43325016 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 144 |
| Conread position: | 799-965 |
| Cow position: | chr9:30059394-30059224 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 799-996 |
| Cow position: | chr9:24927954-24927747 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 179 |
| Conread position: | 819-989 |
| Cow position: | chr9:31629329-31629497 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 820-989 |
| Cow position: | chr9:48128552-48128726 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 34, 124 |
| Conread position: | 821-961 |
| Cow position: | chr9:49270097-49270241 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 821-985 |
| Cow position: | chr9:37406016-37406185 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 32, 161 |
| Conread position: | 821-991 |
| Cow position: | chr9:12851787-12851609 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 821-995 |
| Cow position: | chr9:38755563-38755741 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 821-996 |
| Cow position: | chr9:26143407-26143229 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 151 |
| Conread position: | 822-989 |
| Cow position: | chr9:30767973-30768143 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 829-992 |
| Cow position: | chr9:43482053-43482224 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 20, 156 |
| Conread position: | 829-996 |
| Cow position: | chr9:10300640-10300811 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.