Cow genome map
| Conread name: | Ss1.1-rtes14_b13.5 |
| Conread position: | 1-290 |
| Cow position: | chr14:25876734-25877024 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 1-296 |
| Cow position: | chr14:25783507-25783803 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 1-296 |
| Cow position: | chr14:25784263-25784559 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 51 |
| Conread position: | 1-296 |
| Cow position: | chr14:25794851-25794555 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 72, 53 |
| Conread position: | 1-297 |
| Cow position: | chr14:25783927-25784224 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 51 |
| Conread position: | 1-297 |
| Cow position: | chr14:25795187-25794890 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 133, 48 |
| Conread position: | 1-299 |
| Cow position: | chr14:25783591-25783889 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 50 |
| Conread position: | 1-302 |
| Cow position: | chr14:25784347-25784649 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 50 |
| Conread position: | 1-304 |
| Cow position: | chr14:25784431-25784735 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 1-304 |
| Cow position: | chr14:25860187-25860491 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 50 |
| Conread position: | 1-314 |
| Cow position: | chr14:25783843-25784157 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 37 |
| Conread position: | 1-328 |
| Cow position: | chr14:3127775-3127447 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 277, 57 |
| Conread position: | 1-328 |
| Cow position: | chr14:25783759-25784087 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 50 |
| Conread position: | 1-328 |
| Cow position: | chr14:25784011-25784339 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 50 |
| Conread position: | 1-328 |
| Cow position: | chr14:25784095-25784423 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 1-328 |
| Cow position: | chr14:25794683-25794355 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 148, 49 |
| Conread position: | 2-292 |
| Cow position: | chr14:25836295-25836586 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 267, 56 |
| Conread position: | 2-296 |
| Cow position: | chr14:680891-681186 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 276, 56 |
| Conread position: | 2-296 |
| Cow position: | chr14:3127858-3127563 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 263, 50 |
| Conread position: | 2-296 |
| Cow position: | chr14:3155978-3156273 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 2-296 |
| Cow position: | chr14:25836631-25836926 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 146, 56 |
| Conread position: | 2-296 |
| Cow position: | chr14:25877071-25877366 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 56 |
| Conread position: | 2-309 |
| Cow position: | chr14:25836379-25836687 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 267, 46 |
| Conread position: | 2-320 |
| Cow position: | chr14:25860020-25860342 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 154, 56 |
| Conread position: | 2-329 |
| Cow position: | chr14:3156062-3156390 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 276, 56 |
| Conread position: | 5-206 |
| Cow position: | chr14:681062-681262 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 5-267 |
| Cow position: | chr14:25859351-25859612 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 113, 53 |
| Conread position: | 5-296 |
| Cow position: | chr14:3155408-3155700 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 227, 53 |
| Conread position: | 5-297 |
| Cow position: | chr14:25794763-25794470 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 47 |
| Conread position: | 5-297 |
| Cow position: | chr14:25795351-25795058 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 5-314 |
| Cow position: | chr14:25784183-25784493 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 47 |
| Conread position: | 5-328 |
| Cow position: | chr14:25783679-25784003 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 5-328 |
| Cow position: | chr14:25795015-25794691 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 46 |
| Conread position: | 5-329 |
| Cow position: | chr14:25794931-25794606 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 260, 58 |
| Conread position: | 7-314 |
| Cow position: | chr14:3155899-3156207 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 258, 37 |
| Conread position: | 8-259 |
| Cow position: | chr14:25860110-25860360 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 55 |
| Conread position: | 8-296 |
| Cow position: | chr14:3101417-3101129 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 226, 55 |
| Conread position: | 8-314 |
| Cow position: | chr14:25877161-25877468 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 66, 55 |
| Conread position: | 8-328 |
| Cow position: | chr14:25783346-25783667 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 43 |
| Conread position: | 11-285 |
| Cow position: | chr14:25794421-25794147 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 11-297 |
| Cow position: | chr14:25794589-25794301 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 250, 40 |
| Conread position: | 11-303 |
| Cow position: | chr14:25836136-25836429 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 258, 47 |
| Conread position: | 11-314 |
| Cow position: | chr14:25795093-25794789 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 61 |
| Conread position: | 11-329 |
| Cow position: | chr14:25783433-25783752 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 37 |
| Conread position: | 15-297 |
| Cow position: | chr14:25795257-25794974 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 254, 43 |
| Conread position: | 17-270 |
| Cow position: | chr14:680990-681242 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 137, 41 |
| Conread position: | 20-328 |
| Cow position: | chr14:25795420-25795111 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 67-329 |
| Cow position: | chr14:25795458-25795194 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 72-314 |
| Cow position: | chr14:25783325-25783569 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 197, 0 |
Show alignments to all cow chromosomes.