Cow genome map
| Conread name: | Ss1.1-rtes14_b13.5 |
| Conread position: | 1-233 |
| Cow position: | chr19:14940824-14941055 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-254 |
| Cow position: | chr19:14948303-14948051 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-254 |
| Cow position: | chr19:23614856-23615108 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 231, 52 |
| Conread position: | 1-264 |
| Cow position: | chr19:20635385-20635123 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-267 |
| Cow position: | chr19:23614100-23614365 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-290 |
| Cow position: | chr19:14940656-14940946 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 210, 57 |
| Conread position: | 1-290 |
| Cow position: | chr19:23614352-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 267, 60 |
| Conread position: | 1-292 |
| Cow position: | chr19:23614604-23614896 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 1-296 |
| Cow position: | chr19:20677863-20678159 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 161, 57 |
| Conread position: | 1-296 |
| Cow position: | chr19:20677947-20678243 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 1-296 |
| Cow position: | chr19:23613932-23614228 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 268, 51 |
| Conread position: | 1-296 |
| Cow position: | chr19:23614184-23614480 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 271, 49 |
| Conread position: | 1-296 |
| Cow position: | chr19:23614268-23614564 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 194, 57 |
| Conread position: | 1-296 |
| Cow position: | chr19:23614688-23614984 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 1-297 |
| Cow position: | chr19:14960227-14959933 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 267, 57 |
| Conread position: | 1-309 |
| Cow position: | chr19:14940404-14940713 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 271, 49 |
| Conread position: | 1-314 |
| Cow position: | chr19:20635637-20635323 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 271, 52 |
| Conread position: | 1-314 |
| Cow position: | chr19:23613848-23614162 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 267, 49 |
| Conread position: | 1-314 |
| Cow position: | chr19:23650054-23650368 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 267, 60 |
| Conread position: | 1-320 |
| Cow position: | chr19:23649718-23650038 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 119, 57 |
| Conread position: | 2-253 |
| Cow position: | chr19:23597446-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 2-259 |
| Cow position: | chr19:23649551-23649807 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 56 |
| Conread position: | 2-264 |
| Cow position: | chr19:14940741-14941002 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 2-271 |
| Cow position: | chr19:20635300-20635032 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 2-280 |
| Cow position: | chr19:14959572-14959294 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 235, 56 |
| Conread position: | 2-296 |
| Cow position: | chr19:14948469-14948175 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 273, 51 |
| Conread position: | 2-296 |
| Cow position: | chr19:14960060-14959767 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 269, 56 |
| Conread position: | 2-296 |
| Cow position: | chr19:20635552-20635257 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 267, 56 |
| Conread position: | 2-296 |
| Cow position: | chr19:23597194-23597489 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 270, 61 |
| Conread position: | 2-296 |
| Cow position: | chr19:23597278-23597573 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 267, 60 |
| Conread position: | 2-296 |
| Cow position: | chr19:23614017-23614312 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 267, 49 |
| Conread position: | 2-296 |
| Cow position: | chr19:23649467-23649762 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 72, 56 |
| Conread position: | 2-296 |
| Cow position: | chr19:23649803-23650098 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 2-296 |
| Cow position: | chr19:23649971-23650266 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 270, 56 |
| Conread position: | 2-296 |
| Cow position: | chr19:43570227-43569932 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 179, 64 |
| Conread position: | 2-297 |
| Cow position: | chr19:14940237-14940533 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 267, 61 |
| Conread position: | 2-297 |
| Cow position: | chr19:20635468-20635172 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 2-297 |
| Cow position: | chr19:23613513-23613809 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 270, 61 |
| Conread position: | 2-297 |
| Cow position: | chr19:23614437-23614733 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 263, 51 |
| Conread position: | 2-298 |
| Cow position: | chr19:14940573-14940870 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 2-302 |
| Cow position: | chr19:20677444-20677745 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 2-302 |
| Cow position: | chr19:20678368-20678669 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 2-314 |
| Cow position: | chr19:23597362-23597675 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 149, 56 |
| Conread position: | 2-317 |
| Cow position: | chr19:20678032-20678348 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 2-317 |
| Cow position: | chr19:23614521-23614837 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 266, 51 |
| Conread position: | 2-337 |
| Cow position: | chr19:14940321-14940660 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 267, 56 |
| Conread position: | 3-296 |
| Cow position: | chr19:14959160-14958872 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 262, 41 |
| Conread position: | 3-296 |
| Cow position: | chr19:14960477-14960183 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 265, 55 |
| Conread position: | 5-259 |
| Cow position: | chr19:14959080-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 228, 53 |
| Conread position: | 5-264 |
| Cow position: | chr19:14960141-14959883 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 5-264 |
| Cow position: | chr19:23650142-23650400 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 5-295 |
| Cow position: | chr19:20677699-20677990 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 5-296 |
| Cow position: | chr19:14940156-14940448 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 53 |
| Conread position: | 5-296 |
| Cow position: | chr19:20678287-20678579 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 157, 47 |
| Conread position: | 5-296 |
| Cow position: | chr19:23613768-23614060 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 227, 45 |
| Conread position: | 5-297 |
| Cow position: | chr19:14940072-14940365 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 5-297 |
| Cow position: | chr19:23614776-23615069 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 273, 45 |
| Conread position: | 5-324 |
| Cow position: | chr19:43570140-43569820 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 266, 48 |
| Conread position: | 5-328 |
| Cow position: | chr19:14939988-14940312 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 264, 53 |
| Conread position: | 8-296 |
| Cow position: | chr19:20677534-20677823 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 256, 64 |
| Conread position: | 8-296 |
| Cow position: | chr19:20678122-20678411 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 8-297 |
| Cow position: | chr19:23613435-23613725 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 257, 50 |
| Conread position: | 8-298 |
| Cow position: | chr19:23613351-23613641 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 261, 55 |
| Conread position: | 8-303 |
| Cow position: | chr19:14959649-14959354 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 148, 15 |
| Conread position: | 11-296 |
| Cow position: | chr19:14960385-14960101 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 255, 40 |
| Conread position: | 11-314 |
| Cow position: | chr19:14915967-14916270 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 11-337 |
| Cow position: | chr19:43570050-43569722 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 257, 47 |
| Conread position: | 17-317 |
| Cow position: | chr19:20678215-20678516 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 224, 34 |
| Conread position: | 29-295 |
| Cow position: | chr19:14948359-14948092 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 246, 29 |
| Conread position: | 71-328 |
| Cow position: | chr19:23597094-23597353 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 198, 0 |
Show alignments to all cow chromosomes.