Cow genome map
| Conread name: | Ss1.1-rtes14_b13.5 |
| Conread position: | 1-264 |
| Cow position: | chr22:12418865-12418603 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 72, 51 |
| Conread position: | 1-296 |
| Cow position: | chr22:12431410-12431114 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 1-296 |
| Cow position: | chr22:12475975-12475679 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 268, 52 |
| Conread position: | 1-296 |
| Cow position: | chr22:12476227-12475931 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 232, 57 |
| Conread position: | 1-296 |
| Cow position: | chr22:12499200-12499496 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 1-297 |
| Cow position: | chr22:12399262-12398965 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 232, 62 |
| Conread position: | 1-297 |
| Cow position: | chr22:12475723-12475426 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 231, 62 |
| Conread position: | 1-297 |
| Cow position: | chr22:12499536-12499833 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 264, 62 |
| Conread position: | 1-297 |
| Cow position: | chr22:14429808-14430105 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 1-298 |
| Cow position: | chr22:12399598-12399300 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 141, 57 |
| Conread position: | 1-315 |
| Cow position: | chr22:12418949-12418634 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 268, 57 |
| Conread position: | 1-326 |
| Cow position: | chr22:12399178-12398852 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 277, 62 |
| Conread position: | 1-337 |
| Cow position: | chr22:12399346-12399006 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 267, 62 |
| Conread position: | 2-214 |
| Cow position: | chr22:11701432-11701643 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 2-264 |
| Cow position: | chr22:12475554-12475293 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 2-264 |
| Cow position: | chr22:12499705-12499966 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 2-267 |
| Cow position: | chr22:11641189-11641453 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 2-292 |
| Cow position: | chr22:12475806-12475516 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 267, 56 |
| Conread position: | 2-296 |
| Cow position: | chr22:11640937-11641232 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 2-296 |
| Cow position: | chr22:11641105-11641400 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 219, 42 |
| Conread position: | 2-296 |
| Cow position: | chr22:12399429-12399134 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 276, 56 |
| Conread position: | 2-296 |
| Cow position: | chr22:12399681-12399386 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 267, 51 |
| Conread position: | 2-296 |
| Cow position: | chr22:12475638-12475343 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 266, 49 |
| Conread position: | 2-296 |
| Cow position: | chr22:14429641-14429936 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 267, 51 |
| Conread position: | 2-296 |
| Cow position: | chr22:46654428-46654723 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 266, 49 |
| Conread position: | 2-297 |
| Cow position: | chr22:12399093-12398797 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 225, 56 |
| Conread position: | 2-297 |
| Cow position: | chr22:12399513-12399217 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 2-297 |
| Cow position: | chr22:12431073-12430777 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 267, 59 |
| Conread position: | 2-297 |
| Cow position: | chr22:12431157-12430861 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 267, 56 |
| Conread position: | 2-297 |
| Cow position: | chr22:12431325-12431029 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 263, 51 |
| Conread position: | 2-297 |
| Cow position: | chr22:12499621-12499917 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 266, 49 |
| Conread position: | 2-309 |
| Cow position: | chr22:12458445-12458137 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 276, 50 |
| Conread position: | 2-314 |
| Cow position: | chr22:12385675-12385358 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 2-314 |
| Cow position: | chr22:12432417-12432104 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 56 |
| Conread position: | 2-314 |
| Cow position: | chr22:12499453-12499766 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 267, 53 |
| Conread position: | 2-319 |
| Cow position: | chr22:12498949-12499267 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 267, 48 |
| Conread position: | 2-327 |
| Cow position: | chr22:12499285-12499611 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 267, 51 |
| Conread position: | 2-328 |
| Cow position: | chr22:12458109-12457782 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 2-328 |
| Cow position: | chr22:12458529-12458202 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 273, 49 |
| Conread position: | 4-296 |
| Cow position: | chr22:12458191-12457898 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 145, 49 |
| Conread position: | 5-292 |
| Cow position: | chr22:12431238-12430950 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 5-296 |
| Cow position: | chr22:12385248-12384956 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 222, 53 |
| Conread position: | 5-296 |
| Cow position: | chr22:12431994-12431702 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 149, 53 |
| Conread position: | 5-296 |
| Cow position: | chr22:12476055-12475763 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 5-296 |
| Cow position: | chr22:14429728-14430020 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 5-297 |
| Cow position: | chr22:12430986-12430693 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 213, 56 |
| Conread position: | 5-301 |
| Cow position: | chr22:12458358-12458061 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 260, 53 |
| Conread position: | 5-309 |
| Cow position: | chr22:11640856-11641161 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 264, 53 |
| Conread position: | 5-315 |
| Cow position: | chr22:12431658-12431347 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 5-328 |
| Cow position: | chr22:11640772-11641096 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 147, 46 |
| Conread position: | 5-328 |
| Cow position: | chr22:12476139-12475815 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 211, 53 |
| Conread position: | 8-258 |
| Cow position: | chr22:12458019-12457770 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 8-296 |
| Cow position: | chr22:12431739-12431450 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 257, 50 |
| Conread position: | 8-305 |
| Cow position: | chr22:12431907-12431608 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 9-296 |
| Cow position: | chr22:12399843-12399554 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 11-297 |
| Cow position: | chr22:11640694-11640981 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 264, 42 |
| Conread position: | 11-297 |
| Cow position: | chr22:14467979-14468266 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 142, 52 |
| Conread position: | 11-314 |
| Cow position: | chr22:12385410-12385106 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 254, 52 |
| Conread position: | 20-292 |
| Cow position: | chr22:12476460-12476188 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 22-296 |
| Cow position: | chr22:12498885-12499160 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 247, 36 |
| Conread position: | 23-296 |
| Cow position: | chr22:12476373-12476099 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 246, 35 |
| Conread position: | 23-297 |
| Cow position: | chr22:12431808-12431533 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 209, 30 |
| Conread position: | 23-316 |
| Cow position: | chr22:12458592-12458298 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 245, 35 |
| Conread position: | 57-314 |
| Cow position: | chr22:12432447-12432188 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 94 |
| Conread position: | 72-292 |
| Cow position: | chr22:12498850-12499071 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 197, 207 |
Show alignments to all cow chromosomes.