Cow genome map
| Conread name: | Ss1.1-rtes14_b13.5 |
| Conread position: | 1-255 |
| Cow position: | chr7:11600690-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-270 |
| Cow position: | chr7:42879031-42878763 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-292 |
| Cow position: | chr7:3179942-3180233 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 267, 51 |
| Conread position: | 1-296 |
| Cow position: | chr7:3180194-3180490 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 1-296 |
| Cow position: | chr7:3180446-3180742 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 260, 70 |
| Conread position: | 1-296 |
| Cow position: | chr7:8243715-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 1-296 |
| Cow position: | chr7:8325062-8325358 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 1-296 |
| Cow position: | chr7:42879115-42878819 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 264, 50 |
| Conread position: | 1-297 |
| Cow position: | chr7:1014932-1015229 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 268, 62 |
| Conread position: | 1-297 |
| Cow position: | chr7:1015016-1015313 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 277, 62 |
| Conread position: | 1-297 |
| Cow position: | chr7:3179774-3180071 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 274, 62 |
| Conread position: | 1-297 |
| Cow position: | chr7:3179858-3180155 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 268, 62 |
| Conread position: | 1-297 |
| Cow position: | chr7:3180026-3180323 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 268, 62 |
| Conread position: | 1-297 |
| Cow position: | chr7:11600858-11600561 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 271, 62 |
| Conread position: | 1-301 |
| Cow position: | chr7:42878779-42878479 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 268, 51 |
| Conread position: | 1-306 |
| Cow position: | chr7:42878863-42878556 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 1-309 |
| Cow position: | chr7:42878695-42878386 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 268, 47 |
| Conread position: | 1-314 |
| Cow position: | chr7:3180110-3180424 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 271, 54 |
| Conread position: | 1-314 |
| Cow position: | chr7:11600774-11600460 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 267, 57 |
| Conread position: | 1-316 |
| Cow position: | chr7:42879199-42878883 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 268, 60 |
| Conread position: | 1-317 |
| Cow position: | chr7:11601110-11600793 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 265, 51 |
| Conread position: | 1-319 |
| Cow position: | chr7:18390155-18390474 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 110, 62 |
| Conread position: | 1-324 |
| Cow position: | chr7:3180530-3180853 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 155, 62 |
| Conread position: | 2-215 |
| Cow position: | chr7:1440052-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 2-255 |
| Cow position: | chr7:42878526-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-258 |
| Cow position: | chr7:1015185-1015440 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-296 |
| Cow position: | chr7:1014765-1015060 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 107, 61 |
| Conread position: | 2-296 |
| Cow position: | chr7:8277674-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 2-296 |
| Cow position: | chr7:8324979-8325274 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 2-296 |
| Cow position: | chr7:8325819-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 146, 70 |
| Conread position: | 2-296 |
| Cow position: | chr7:18390240-18390535 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 263, 61 |
| Conread position: | 2-296 |
| Cow position: | chr7:18390408-18390703 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 263, 56 |
| Conread position: | 2-296 |
| Cow position: | chr7:18390492-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 270, 61 |
| Conread position: | 2-297 |
| Cow position: | chr7:8325735-8326031 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 2-309 |
| Cow position: | chr7:42878946-42878638 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 130, 46 |
| Conread position: | 2-314 |
| Cow position: | chr7:1014849-1015162 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 132, 51 |
| Conread position: | 2-326 |
| Cow position: | chr7:1015101-1015426 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 266, 48 |
| Conread position: | 2-334 |
| Cow position: | chr7:3180363-3180699 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 132, 42 |
| Conread position: | 5-300 |
| Cow position: | chr7:1439971-1440267 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 264, 46 |
| Conread position: | 5-328 |
| Cow position: | chr7:11601022-11600696 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 260, 48 |
| Conread position: | 8-296 |
| Cow position: | chr7:8243638-8243927 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 147, 64 |
| Conread position: | 8-296 |
| Cow position: | chr7:8324817-8325106 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 64 |
| Conread position: | 8-296 |
| Cow position: | chr7:8325573-8325862 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 65, 45 |
| Conread position: | 8-314 |
| Cow position: | chr7:42879276-42878969 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 11-270 |
| Cow position: | chr7:11601184-11600926 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 13-294 |
| Cow position: | chr7:8325242-8325524 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 23-296 |
| Cow position: | chr7:1014702-1014976 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 252, 40 |
| Conread position: | 29-328 |
| Cow position: | chr7:18390099-18390399 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 68-314 |
| Cow position: | chr7:42879301-42879053 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 72-296 |
| Cow position: | chr7:11434508-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 67 |
Show alignments to all cow chromosomes.