Cow genome map

Conread name: Ss1.1-rthg01_d21.5

Conread position: 3-235
Cow position: chr13:56292023-56291790 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 162, 0

Conread position: 4-324
Cow position: chr13:39983992-39984312 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 204
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 62, 67

Conread position: 9-329
Cow position: chr13:56292182-56291865 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 10-168
Cow position: chr13:56291932-56291773 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 152

Conread position: 10-284
Cow position: chr13:56333730-56334004 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 24

Conread position: 10-319
Cow position: chr13:56292100-56291790 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 293

Conread position: 10-323
Cow position: chr13:39984082-39984395 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 201
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 121, 111

Conread position: 10-326
Cow position: chr13:39983914-39984230 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 199
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 31

Conread position: 10-329
Cow position: chr13:39984166-39984485 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 56, 61

Conread position: 10-329
Cow position: chr13:39984250-39984569 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position: chr13:39984418-39984737 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 10-345
Cow position: chr13:56292257-56291936 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 15-329
Cow position: chr13:56292336-56292033 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 204
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 139, 0

Conread position: 16-274
Cow position: chr13:39930920-39931176 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 232, 0

Conread position: 16-329
Cow position: chr13:39930584-39930897 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 286, 282

Conread position: 16-329
Cow position: chr13:39930668-39930981 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 286, 282

Conread position: 16-329
Cow position: chr13:39930752-39931065 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 282

Conread position: 16-329
Cow position: chr13:39930836-39931149 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 282

Conread position: 18-239
Cow position: chr13:39984678-39984899 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 151
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 113, 102

Conread position: 18-329
Cow position: chr13:39984510-39984821 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 19-323
Cow position: chr13:22125288-22125592 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 190
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 160, 154

Conread position: 19-323
Cow position: chr13:24163014-24163318 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 189
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 160, 154

Conread position: 19-329
Cow position: chr13:39984343-39984653 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 199
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 31-285
Cow position: chr13:22124964-22125218 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 148, 142

Conread position: 31-285
Cow position: chr13:24162690-24162944 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 168
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 148, 142

Conread position: 31-331
Cow position: chr13:24162858-24163159 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 190
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 273, 279

Conread position: 32-321
Cow position: chr13:56292744-56292456 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 184
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 163, 14

Conread position: 38-327
Cow position: chr13:22124887-22125176 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 183
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 210, 204

Conread position: 39-329
Cow position: chr13:24162614-24162904 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 183
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 209, 203

Conread position: 48-324
Cow position: chr13:39984624-39984900 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 167, 148

Conread position: 57-345
Cow position: chr13:56333693-56333978 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 187
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 73, 84

Conread position: 68-327
Cow position: chr13:56292873-56292618 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 98

Conread position: 82-329
Cow position: chr13:39983902-39984149 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 131, 121

Conread position: 89-320
Cow position: chr13:56292436-56292199 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 104, 0

Show alignments to all cow chromosomes.