Cow genome map

Conread name: Ss1.1-rthg01_d21.5

Conread position: 1-308
Cow position: chr14:25859360-25859668 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 189
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 293, 0

Conread position: 3-284
Cow position: chr14:25784026-25784307 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 25, 45

Conread position: 3-284
Cow position: chr14:25784362-25784643 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 45

Conread position: 3-285
Cow position: chr14:680905-681187 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 187
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 61, 68

Conread position: 3-285
Cow position: chr14:3080080-3079798 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 183
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 64, 68

Conread position: 3-285
Cow position: chr14:3080584-3080302 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 181
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 3-285
Cow position: chr14:3101326-3101045 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 68

Conread position: 3-285
Cow position: chr14:3127592-3127310 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 181
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 68

Conread position: 3-285
Cow position: chr14:3127676-3127394 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 210, 215

Conread position: 3-316
Cow position: chr14:680737-681050 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 204
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 281, 289

Conread position: 3-318
Cow position: chr14:25860034-25860349 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 201
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 27, 33

Conread position: 3-318
Cow position: chr14:25877085-25877400 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 198
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 128, 140

Conread position: 3-324
Cow position: chr14:25795340-25795019 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 208
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 50, 34

Conread position: 3-329
Cow position: chr14:680485-680811 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 200
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 68

Conread position: 3-329
Cow position: chr14:25795256-25794930 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 199
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 3-329
Cow position: chr14:25836729-25837055 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 200
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-330
Cow position: chr14:25794752-25794425 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 48

Conread position: 3-330
Cow position: chr14:25836477-25836804 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 207
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 3-331
Cow position: chr14:25783606-25783934 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 211
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 28, 45

Conread position: 4-291
Cow position: chr14:25784447-25784733 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 185
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 208, 195

Conread position: 4-301
Cow position: chr14:3156077-3156373 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 199
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 26, 35

Conread position: 4-325
Cow position: chr14:3155909-3156230 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 4-329
Cow position: chr14:25783439-25783764 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 25, 47

Conread position: 4-329
Cow position: chr14:25784111-25784436 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 130, 118

Conread position: 5-285
Cow position: chr14:25859447-25859728 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 176
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 6-288
Cow position: chr14:25859197-25859479 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 185
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 127, 137

Conread position: 6-329
Cow position: chr14:25836816-25837139 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 201
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 199, 190

Conread position: 7-329
Cow position: chr14:25836901-25837223 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 208
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 205, 190

Conread position: 8-279
Cow position: chr14:680994-681265 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 186
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 23, 31

Conread position: 8-284
Cow position: chr14:3080411-3080135 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 59, 63

Conread position: 8-285
Cow position: chr14:447604-447881 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 177
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 8-285
Cow position: chr14:3079991-3079714 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 56, 63

Conread position: 8-285
Cow position: chr14:3127755-3127478 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 197, 188

Conread position: 8-326
Cow position: chr14:3156165-3156483 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 204
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 8-329
Cow position: chr14:680658-680979 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 206
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 59, 63

Conread position: 8-329
Cow position: chr14:3127923-3127602 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 207
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 59, 63

Conread position: 8-329
Cow position: chr14:25836314-25836635 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 203
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 8-331
Cow position: chr14:25896053-25896376 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 200
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 26

Conread position: 9-251
Cow position: chr14:3155593-3155835 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 9-285
Cow position: chr14:447857-448133 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 176
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 72

Conread position: 9-285
Cow position: chr14:3080326-3080050 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 180
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 58, 62

Conread position: 9-329
Cow position: chr14:3080662-3080342 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 166, 170

Conread position: 9-329
Cow position: chr14:3080830-3080510 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 208
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 10-278
Cow position: chr14:25859957-25860225 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 173
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 39

Conread position: 10-278
Cow position: chr14:25877008-25877276 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 174
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 39

Conread position: 10-284
Cow position: chr14:25783697-25783971 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 180
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 10-285
Cow position: chr14:447774-448049 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 176
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 61

Conread position: 10-285
Cow position: chr14:3080493-3080218 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 10-285
Cow position: chr14:3080745-3080470 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 180
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 10-288
Cow position: chr14:25877344-25877622 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 206, 187

Conread position: 10-323
Cow position: chr14:25794913-25794600 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 40

Conread position: 10-325
Cow position: chr14:25783361-25783676 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position: chr14:447690-448009 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 208
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 57, 61

Conread position: 10-329
Cow position: chr14:3080913-3080594 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 197
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 28

Conread position: 10-329
Cow position: chr14:25783529-25783848 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position: chr14:25783781-25784100 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 205
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 28, 41

Conread position: 10-329
Cow position: chr14:25783949-25784268 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 21, 34

Conread position: 10-329
Cow position: chr14:25784201-25784520 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 31, 24

Conread position: 10-329
Cow position: chr14:25794661-25794342 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 72, 54

Conread position: 10-329
Cow position: chr14:25794829-25794510 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 127, 112

Conread position: 10-329
Cow position: chr14:25794997-25794678 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 58

Conread position: 10-329
Cow position: chr14:25795165-25794846 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 206
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 54, 61

Conread position: 10-329
Cow position: chr14:25836232-25836551 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 200
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 288, 299

Conread position: 10-329
Cow position: chr14:25836568-25836887 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 204
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position: chr14:25859285-25859604 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 207
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 126, 133

Conread position: 10-329
Cow position: chr14:25859537-25859856 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 203
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 202, 186

Conread position: 10-329
Cow position: chr14:25876504-25876823 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 210
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 169, 164

Conread position: 10-329
Cow position: chr14:25876588-25876907 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 208
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 202, 187

Conread position: 10-329
Cow position: chr14:25876672-25876991 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 209
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 126, 133

Conread position: 10-329
Cow position: chr14:25876924-25877243 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 207
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 34

Conread position: 10-329
Cow position: chr14:25877428-25877747 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 208
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 24

Conread position: 10-329
Cow position: chr14:25910932-25911251 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 202
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 169, 165

Conread position: 10-330
Cow position: chr14:25794493-25794172 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 208
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 54, 61

Conread position: 14-329
Cow position: chr14:3128001-3127686 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 202
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 57

Conread position: 15-329
Cow position: chr14:25876425-25876739 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 201
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 37

Conread position: 16-256
Cow position: chr14:3079899-3079657 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 51, 55

Conread position: 16-329
Cow position: chr14:25836406-25836719 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 122, 127

Conread position: 16-330
Cow position: chr14:3080151-3079837 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 28, 18

Conread position: 22-330
Cow position: chr14:3061711-3061404 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 191
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 289, 17

Conread position: 31-292
Cow position: chr14:3100631-3100370 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 99, 92

Conread position: 46-330
Cow position: chr14:25794541-25794256 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 97, 90

Conread position: 55-329
Cow position: chr14:447567-447841 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 181
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 56-329
Cow position: chr14:25784331-25784604 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 57-329
Cow position: chr14:25783324-25783596 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 175
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 139, 153

Conread position: 58-314
Cow position: chr14:25876888-25877144 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 163
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 159, 165

Conread position: 58-317
Cow position: chr14:25895935-25896194 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 164
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 159, 152

Conread position: 58-329
Cow position: chr14:25795453-25795182 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 156, 145

Conread position: 58-329
Cow position: chr14:25836112-25836383 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 58-329
Cow position: chr14:25910896-25911167 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 171
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 136, 142

Conread position: 58-345
Cow position: chr14:25859837-25860121 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 186
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 73, 81

Conread position: 60-329
Cow position: chr14:25836030-25836299 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 172
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 77

Conread position: 70-318
Cow position: chr14:25910744-25910988 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 141, 46

Conread position: 76-317
Cow position: chr14:3155408-3155649 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.