Cow genome map
| Conread name: | Ss1.1-rthg01_d21.5 |
| Conread position: | 1-329 |
| Cow position: | chr17:22473594-22473922 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 297, 308 |
| Conread position: | 3-273 |
| Cow position: | chr17:22551750-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-323 |
| Cow position: | chr17:22589756-22589436 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 200 |
| Conread position: | 3-324 |
| Cow position: | chr17:22452119-22451798 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-325 |
| Cow position: | chr17:22589504-22589182 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 133, 139 |
| Conread position: | 3-326 |
| Cow position: | chr17:22498881-22498558 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 209, 200 |
| Conread position: | 3-329 |
| Cow position: | chr17:22452035-22451709 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 191, 206 |
| Conread position: | 3-329 |
| Cow position: | chr17:22452203-22451877 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 209, 193 |
| Conread position: | 3-329 |
| Cow position: | chr17:22452371-22452045 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 119, 106 |
| Conread position: | 3-329 |
| Cow position: | chr17:22499133-22498807 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr17:22552086-22551760 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr17:22552338-22552012 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr17:22552506-22552180 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr17:22553094-22552768 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-329 |
| Cow position: | chr17:22552673-22552348 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-329 |
| Cow position: | chr17:22589669-22589346 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 8-326 |
| Cow position: | chr17:22499212-22498894 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 204, 195 |
| Conread position: | 8-329 |
| Cow position: | chr17:22473517-22473838 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 8-329 |
| Cow position: | chr17:22552249-22551928 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 303 |
| Conread position: | 8-329 |
| Cow position: | chr17:22590171-22589850 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-329 |
| Cow position: | chr17:22552164-22551844 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-329 |
| Cow position: | chr17:22590002-22589682 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 194 |
| Conread position: | 10-262 |
| Cow position: | chr17:22498790-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-284 |
| Cow position: | chr17:22499294-22499020 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 10-319 |
| Cow position: | chr17:22473267-22473576 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-328 |
| Cow position: | chr17:22551827-22551509 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr17:22452280-22451961 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr17:22473351-22473670 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 203, 196 |
| Conread position: | 10-329 |
| Cow position: | chr17:22473435-22473754 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 118, 108 |
| Conread position: | 10-329 |
| Cow position: | chr17:22498958-22498639 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 10-329 |
| Cow position: | chr17:22552583-22552264 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 173 |
| Conread position: | 10-329 |
| Cow position: | chr17:22552751-22552432 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr17:22552835-22552516 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 133 |
| Conread position: | 10-329 |
| Cow position: | chr17:22552919-22552600 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr17:22553003-22552684 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 301 |
| Conread position: | 10-329 |
| Cow position: | chr17:22589581-22589262 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 201, 194 |
| Conread position: | 10-329 |
| Cow position: | chr17:22589917-22589598 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr17:22590253-22589934 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 186, 201 |
| Conread position: | 14-329 |
| Cow position: | chr17:22499374-22499059 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-329 |
| Cow position: | chr17:22553167-22552852 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-285 |
| Cow position: | chr17:41440596-41440327 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 16-329 |
| Cow position: | chr17:22590079-22589766 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-345 |
| Cow position: | chr17:22551989-22551663 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 0 |
| Conread position: | 19-329 |
| Cow position: | chr17:22551902-22551592 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-329 |
| Cow position: | chr17:22552406-22552096 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-329 |
| Cow position: | chr17:22473201-22473502 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 41-329 |
| Cow position: | chr17:22590306-22590018 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 154, 168 |
| Conread position: | 49-274 |
| Cow position: | chr17:22473726-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 57-324 |
| Cow position: | chr17:22452401-22452134 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-351 |
| Cow position: | chr17:22498984-22498704 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 263, 0 |
| Conread position: | 78-329 |
| Cow position: | chr17:22499394-22499143 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 92-329 |
| Cow position: | chr17:22553173-22552936 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 116, 104 |
Show alignments to all cow chromosomes.