Cow genome map

Conread name: Ss1.1-rthg01_d21.5

Conread position: 3-288
Cow position: chr2:82799619-82799904 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 40, 31

Conread position: 3-308
Cow position: chr2:78754521-78754823 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 301, 167

Conread position: 3-312
Cow position: chr2:86465527-86465836 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 193
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 68

Conread position: 3-328
Cow position: chr2:86465275-86465600 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 201
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 314, 320

Conread position: 3-329
Cow position: chr2:5874837-5874511 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 208
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 135, 140

Conread position: 3-329
Cow position: chr2:78754187-78754511 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 205
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 234, 247

Conread position: 3-329
Cow position: chr2:78755009-78755335 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-329
Cow position: chr2:82799535-82799861 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 110

Conread position: 3-329
Cow position: chr2:86465191-86465517 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 206
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 78

Conread position: 4-279
Cow position: chr2:48689447-48689173 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 176
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 212, 30

Conread position: 7-329
Cow position: chr2:82800043-82800365 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 8-284
Cow position: chr2:86465364-86465640 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 179
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 226, 231

Conread position: 8-285
Cow position: chr2:86465448-86465725 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 141, 147

Conread position: 8-329
Cow position: chr2:82799792-82800113 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 8-331
Cow position: chr2:48689527-48689205 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 203
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 27

Conread position: 10-253
Cow position: chr2:78756189-78756428 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 116, 0

Conread position: 10-288
Cow position: chr2:78755768-78756047 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 186
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 18, 38

Conread position: 10-318
Cow position: chr2:82800130-82800438 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 206
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 178, 172

Conread position: 10-323
Cow position: chr2:78754444-78754753 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 202
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 244, 0

Conread position: 10-323
Cow position: chr2:78755351-78755663 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 162, 0

Conread position: 10-323
Cow position: chr2:82799458-82799771 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 202, 186

Conread position: 10-329
Cow position: chr2:5874662-5874343 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 20, 26

Conread position: 10-329
Cow position: chr2:78754278-78754595 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 204
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 206, 165

Conread position: 10-329
Cow position: chr2:78754848-78755167 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position: chr2:78755184-78755502 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 59

Conread position: 10-329
Cow position: chr2:78755268-78755585 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 10-329
Cow position: chr2:78755435-78755751 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 199, 78

Conread position: 10-329
Cow position: chr2:78755602-78755919 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 214
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 38, 24

Conread position: 10-329
Cow position: chr2:82799710-82800029 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 208
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 184, 190

Conread position: 10-329
Cow position: chr2:82799878-82800197 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 215
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position: chr2:82799962-82800281 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 133, 121

Conread position: 11-319
Cow position: chr2:78754114-78754419 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 201
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 37, 27

Conread position: 12-328
Cow position: chr2:78756022-78756337 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 18, 35

Conread position: 14-329
Cow position: chr2:78754936-78755251 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 195

Conread position: 15-323
Cow position: chr2:5875161-5874853 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 203
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 190, 179

Conread position: 15-329
Cow position: chr2:78754700-78754999 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 14, 0

Conread position: 16-329
Cow position: chr2:78755690-78756003 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 100, 118

Conread position: 19-316
Cow position: chr2:86465795-86466091 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 185
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 52

Conread position: 19-331
Cow position: chr2:86465963-86466273 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 194
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 297, 211

Conread position: 25-323
Cow position: chr2:78754377-78754673 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 96, 65

Conread position: 28-285
Cow position: chr2:86465048-86465305 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 101, 92

Conread position: 38-329
Cow position: chr2:5874550-5874259 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 185
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 238, 249

Conread position: 48-329
Cow position: chr2:5874456-5874175 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 179
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 250, 262

Conread position: 68-329
Cow position: chr2:5874688-5874427 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 44, 52

Conread position: 70-329
Cow position: chr2:78754824-78755083 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 90-323
Cow position: chr2:86465950-86466183 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 122, 109

Conread position: 103-329
Cow position: chr2:82799467-82799693 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 109, 94

Show alignments to all cow chromosomes.