Cow genome map
| Conread name: | Ss1.1-rthg01_d21.5 |
| Conread position: | 1-253 |
| Cow position: | chr23:25660494-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 132, 120 |
| Conread position: | 1-329 |
| Cow position: | chr23:24560715-24560387 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-285 |
| Cow position: | chr23:24535869-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 65, 69 |
| Conread position: | 2-329 |
| Cow position: | chr23:25626542-25626866 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 294, 41 |
| Conread position: | 2-346 |
| Cow position: | chr23:24654041-24654382 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 194 |
| Conread position: | 3-168 |
| Cow position: | chr23:24560293-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 3-270 |
| Cow position: | chr23:24626485-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 195, 188 |
| Conread position: | 3-284 |
| Cow position: | chr23:25626207-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-317 |
| Cow position: | chr23:25724034-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 3-318 |
| Cow position: | chr23:25698395-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 87 |
| Conread position: | 3-319 |
| Cow position: | chr23:24560461-24560145 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-323 |
| Cow position: | chr23:24626401-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-328 |
| Cow position: | chr23:25626708-25627033 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 238, 249 |
| Conread position: | 3-329 |
| Cow position: | chr23:24547069-24546743 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr23:24547237-24546911 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 307 |
| Conread position: | 3-329 |
| Cow position: | chr23:24560545-24560219 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr23:24560797-24560471 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 3-329 |
| Cow position: | chr23:25626459-25626782 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 3-329 |
| Cow position: | chr23:25660328-25660654 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 68 |
| Conread position: | 3-339 |
| Cow position: | chr23:24654126-24654461 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 303, 278 |
| Conread position: | 4-285 |
| Cow position: | chr23:24639478-24639759 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-329 |
| Cow position: | chr23:24522639-24522317 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 6-283 |
| Cow position: | chr23:24521966-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 6-319 |
| Cow position: | chr23:24522721-24522411 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 139, 111 |
| Conread position: | 6-319 |
| Cow position: | chr23:25698644-25698331 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 6-329 |
| Cow position: | chr23:24560626-24560303 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 197 |
| Conread position: | 6-329 |
| Cow position: | chr23:24626320-24626643 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-329 |
| Cow position: | chr23:24639396-24639719 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 6-329 |
| Cow position: | chr23:25626378-25626698 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 143, 161 |
| Conread position: | 6-329 |
| Cow position: | chr23:25698560-25698237 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 237, 252 |
| Conread position: | 7-319 |
| Cow position: | chr23:24639565-24639877 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-319 |
| Cow position: | chr23:25626295-25626604 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 7-326 |
| Cow position: | chr23:24639733-24640052 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-329 |
| Cow position: | chr23:24639649-24639971 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 286 |
| Conread position: | 8-240 |
| Cow position: | chr23:24546896-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-319 |
| Cow position: | chr23:24546980-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-328 |
| Cow position: | chr23:24639230-24639550 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 293, 273 |
| Conread position: | 8-329 |
| Cow position: | chr23:24536031-24535710 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-329 |
| Cow position: | chr23:25660165-25660486 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 194, 207 |
| Conread position: | 9-329 |
| Cow position: | chr23:24535778-24535458 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 9-329 |
| Cow position: | chr23:24639315-24639635 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-240 |
| Cow position: | chr23:25723943-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 119, 123 |
| Conread position: | 10-264 |
| Cow position: | chr23:24639820-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-284 |
| Cow position: | chr23:25626046-25626320 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 10-294 |
| Cow position: | chr23:25660251-25660535 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 111, 121 |
| Conread position: | 10-306 |
| Cow position: | chr23:24522468-24522171 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 10-317 |
| Cow position: | chr23:24560370-24560063 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 254, 238 |
| Conread position: | 10-319 |
| Cow position: | chr23:24547314-24547005 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-319 |
| Cow position: | chr23:24560874-24560565 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 139, 149 |
| Conread position: | 10-323 |
| Cow position: | chr23:24535945-24535632 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 10-325 |
| Cow position: | chr23:25626631-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 205, 189 |
| Conread position: | 10-326 |
| Cow position: | chr23:25660419-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 202, 186 |
| Conread position: | 10-329 |
| Cow position: | chr23:24522552-24522233 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 202, 185 |
| Conread position: | 10-329 |
| Cow position: | chr23:24547146-24546827 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 301 |
| Conread position: | 10-329 |
| Cow position: | chr23:25625962-25626281 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 288, 297 |
| Conread position: | 10-329 |
| Cow position: | chr23:25626130-25626449 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-329 |
| Cow position: | chr23:25724107-25723792 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 124, 129 |
| Conread position: | 38-326 |
| Cow position: | chr23:24626268-24626556 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-288 |
| Cow position: | chr23:25660145-25660361 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-283 |
| Cow position: | chr23:24521982-24521773 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 120, 126 |
| Conread position: | 74-319 |
| Cow position: | chr23:24547334-24547089 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 79-329 |
| Cow position: | chr23:24560889-24560639 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-329 |
| Cow position: | chr23:25724111-25723876 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 157-329 |
| Cow position: | chr23:24626303-24626475 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.