Cow genome map
| Conread name: | Ss1.1-rthg01_d21.5 |
| Conread position: | 2-259 |
| Cow position: | chr24:17070802-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 2-323 |
| Cow position: | chr24:17078003-17077681 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 309 |
| Conread position: | 3-280 |
| Cow position: | chr24:17077749-17077473 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 176, 163 |
| Conread position: | 3-325 |
| Cow position: | chr24:17078085-17077763 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 3-326 |
| Cow position: | chr24:17035446-17035123 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr24:17035614-17035288 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 3-329 |
| Cow position: | chr24:17035698-17035372 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr24:17035866-17035540 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 3-329 |
| Cow position: | chr24:17035950-17035624 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 209, 204 |
| Conread position: | 3-329 |
| Cow position: | chr24:17036454-17036128 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 276, 262 |
| Conread position: | 3-329 |
| Cow position: | chr24:17036538-17036212 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr24:17070467-17070793 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 209, 188 |
| Conread position: | 3-329 |
| Cow position: | chr24:17077917-17077591 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-273 |
| Cow position: | chr24:17013263-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 133 |
| Conread position: | 10-283 |
| Cow position: | chr24:17013179-17013452 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-318 |
| Cow position: | chr24:17035775-17035467 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 10-318 |
| Cow position: | chr24:17077826-17077518 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-326 |
| Cow position: | chr24:17070726-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 118, 111 |
| Conread position: | 10-329 |
| Cow position: | chr24:17035523-17035204 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 288, 299 |
| Conread position: | 10-329 |
| Cow position: | chr24:17036027-17035708 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 10-329 |
| Cow position: | chr24:17036363-17036044 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr24:17036612-17036296 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 10-329 |
| Cow position: | chr24:17070390-17070709 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr24:17070558-17070877 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr24:17070642-17070961 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 189 |
| Conread position: | 10-329 |
| Cow position: | chr24:17078246-17077927 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-329 |
| Cow position: | chr24:17036107-17035792 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-329 |
| Cow position: | chr24:17036188-17035876 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 19-329 |
| Cow position: | chr24:17078153-17077843 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 287, 291 |
| Conread position: | 25-319 |
| Cow position: | chr24:17035340-17035046 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 80-329 |
| Cow position: | chr24:17013165-17013414 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 132, 116 |
| Conread position: | 100-309 |
| Cow position: | chr24:16986451-16986661 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 113, 103 |
Show alignments to all cow chromosomes.