Cow genome map

Conread name: Ss1.1-rthg01_d21.5

Conread position: 2-329
Cow position:
Alignm length: 328
Alignm identity: 217
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 3-239
Cow position:
Alignm length: 237
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-257
Cow position:
Alignm length: 256
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 3-275
Cow position:
Alignm length: 274
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 68

Conread position: 3-279
Cow position:
Alignm length: 279
Alignm identity: 181
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 8, 196

Conread position: 3-279
Cow position:
Alignm length: 279
Alignm identity: 183
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 56

Conread position: 3-299
Cow position:
Alignm length: 299
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 280, 250

Conread position: 3-317
Cow position:
Alignm length: 316
Alignm identity: 210
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 50, 43

Conread position: 3-320
Cow position:
Alignm length: 318
Alignm identity: 215
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 245, 0

Conread position: 3-323
Cow position:
Alignm length: 322
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 140, 135

Conread position: 3-323
Cow position:
Alignm length: 322
Alignm identity: 210
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 209, 193

Conread position: 3-323
Cow position:
Alignm length: 322
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 287

Conread position: 3-324
Cow position:
Alignm length: 322
Alignm identity: 203
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 3-326
Cow position:
Alignm length: 325
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 68

Conread position: 3-328
Cow position:
Alignm length: 327
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 307

Conread position: 3-329
Cow position:
Alignm length: 330
Alignm identity: 226
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 12

Conread position: 3-329
Cow position:
Alignm length: 328
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 45

Conread position: 3-329
Cow position:
Alignm length: 328
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 68

Conread position: 3-329
Cow position:
Alignm length: 327
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-329
Cow position:
Alignm length: 328
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 135

Conread position: 3-329
Cow position:
Alignm length: 328
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 307

Conread position: 3-329
Cow position:
Alignm length: 327
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-329
Cow position:
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 307

Conread position: 3-329
Cow position:
Alignm length: 327
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-329
Cow position:
Alignm length: 334
Alignm identity: 225
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 8, 19

Conread position: 3-329
Cow position:
Alignm length: 327
Alignm identity: 213
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 3-329
Cow position:
Alignm length: 327
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-329
Cow position:
Alignm length: 328
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 298

Conread position: 3-329
Cow position:
Alignm length: 327
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-345
Cow position:
Alignm length: 343
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 0

Conread position: 3-345
Cow position:
Alignm length: 344
Alignm identity: 209
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 190, 212

Conread position: 3-354
Cow position:
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 0

Conread position: 4-283
Cow position:
Alignm length: 280
Alignm identity: 181
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 4-324
Cow position:
Alignm length: 323
Alignm identity: 213
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 139, 134

Conread position: 4-329
Cow position:
Alignm length: 328
Alignm identity: 213
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 139, 134

Conread position: 6-241
Cow position:
Alignm length: 237
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 137, 132

Conread position: 6-329
Cow position:
Alignm length: 325
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 190

Conread position: 7-286
Cow position:
Alignm length: 280
Alignm identity: 195
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 30, 0

Conread position: 7-316
Cow position:
Alignm length: 310
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 8-200
Cow position:
Alignm length: 193
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 8-285
Cow position:
Alignm length: 278
Alignm identity: 189
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 8-288
Cow position:
Alignm length: 283
Alignm identity: 179
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 57, 62

Conread position: 8-323
Cow position:
Alignm length: 318
Alignm identity: 220
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 59, 63

Conread position: 8-324
Cow position:
Alignm length: 318
Alignm identity: 211
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 121, 133

Conread position: 8-327
Cow position:
Alignm length: 320
Alignm identity: 209
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 8-328
Cow position:
Alignm length: 328
Alignm identity: 227
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 56, 63

Conread position: 8-328
Cow position:
Alignm length: 322
Alignm identity: 207
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 61

Conread position: 8-329
Cow position:
Alignm length: 324
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 40, 26

Conread position: 8-329
Cow position:
Alignm length: 323
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 33

Conread position: 8-329
Cow position:
Alignm length: 322
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-329
Cow position:
Alignm length: 322
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-329
Cow position:
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-330
Cow position:
Alignm length: 324
Alignm identity: 202
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 47, 27

Conread position: 8-345
Cow position:
Alignm length: 338
Alignm identity: 225
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 320, 0

Conread position: 8-351
Cow position:
Alignm length: 353
Alignm identity: 224
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 137, 122

Conread position: 9-319
Cow position:
Alignm length: 312
Alignm identity: 200
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 55, 62

Conread position: 9-326
Cow position:
Alignm length: 318
Alignm identity: 200
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 9-328
Cow position:
Alignm length: 321
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 59

Conread position: 9-329
Cow position:
Alignm length: 322
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 112

Conread position: 9-329
Cow position:
Alignm length: 322
Alignm identity: 218
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 100

Conread position: 9-329
Cow position:
Alignm length: 321
Alignm identity: 216
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 9-329
Cow position:
Alignm length: 321
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-329
Cow position:
Alignm length: 321
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-253
Cow position:
Alignm length: 245
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 25

Conread position: 10-278
Cow position:
Alignm length: 269
Alignm identity: 182
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 10-279
Cow position:
Alignm length: 271
Alignm identity: 182
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 203, 7

Conread position: 10-284
Cow position:
Alignm length: 277
Alignm identity: 199
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 57, 61

Conread position: 10-288
Cow position:
Alignm length: 279
Alignm identity: 192
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 174, 0

Conread position: 10-296
Cow position:
Alignm length: 287
Alignm identity: 198
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 10-317
Cow position:
Alignm length: 310
Alignm identity: 194
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 29

Conread position: 10-321
Cow position:
Alignm length: 312
Alignm identity: 213
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 246, 0

Conread position: 10-323
Cow position:
Alignm length: 315
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 300

Conread position: 10-326
Cow position:
Alignm length: 318
Alignm identity: 218
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 41, 30

Conread position: 10-326
Cow position:
Alignm length: 318
Alignm identity: 215
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 262, 255

Conread position: 10-326
Cow position:
Alignm length: 322
Alignm identity: 225
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 28, 175

Conread position: 10-329
Cow position:
Alignm length: 320
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position:
Alignm length: 320
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position:
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position:
Alignm length: 321
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 42

Conread position: 10-329
Cow position:
Alignm length: 320
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-329
Cow position:
Alignm length: 321
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 298

Conread position: 10-329
Cow position:
Alignm length: 320
Alignm identity: 212
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 10-330
Cow position:
Alignm length: 321
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-331
Cow position:
Alignm length: 322
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 12-281
Cow position:
Alignm length: 272
Alignm identity: 178
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 53, 57

Conread position: 15-329
Cow position:
Alignm length: 316
Alignm identity: 209
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 51, 56

Conread position: 19-285
Cow position:
Alignm length: 268
Alignm identity: 180
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 106, 114

Conread position: 19-329
Cow position:
Alignm length: 314
Alignm identity: 203
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 124, 81

Conread position: 19-329
Cow position:
Alignm length: 312
Alignm identity: 193
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 98

Conread position: 19-329
Cow position:
Alignm length: 311
Alignm identity: 193
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 27-329
Cow position:
Alignm length: 305
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 284

Conread position: 31-285
Cow position:
Alignm length: 256
Alignm identity: 169
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 81, 94

Conread position: 32-329
Cow position:
Alignm length: 299
Alignm identity: 201
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 32, 40

Conread position: 43-276
Cow position:
Alignm length: 235
Alignm identity: 154
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 24, 28

Conread position: 43-283
Cow position:
Alignm length: 241
Alignm identity: 152
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 43-329
Cow position:
Alignm length: 291
Alignm identity: 187
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 138, 179

Conread position: 47-329
Cow position:
Alignm length: 283
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 58-323
Cow position:
Alignm length: 266
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 65-329
Cow position:
Alignm length: 266
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 147, 5

Conread position: 70-329
Cow position:
Alignm length: 261
Alignm identity: 184
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 231, 225

Conread position: 74-329
Cow position:
Alignm length: 258
Alignm identity: 171
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 191, 197

Conread position: 76-302
Cow position:
Alignm length: 227
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 189, 0

Conread position: 78-329
Cow position:
Alignm length: 257
Alignm identity: 176
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 56, 40

Conread position: 79-329
Cow position:
Alignm length: 253
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 109, 105

Conread position: 79-329
Cow position:
Alignm length: 251
Alignm identity: 159
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 80-329
Cow position:
Alignm length: 250
Alignm identity: 168
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 116, 0

Conread position: 93-319
Cow position:
Alignm length: 227
Alignm identity: 146
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 96-329
Cow position:
Alignm length: 234
Alignm identity: 163
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 132-329
Cow position:
Alignm length: 198
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 146-326
Cow position:
Alignm length: 181
Alignm identity: 122
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.