Cow genome map
| Conread name: | Ss1.1-rthg01_d21.5 |
| Conread position: | 3-221 |
| Cow position: | chr3:62742785-62743004 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 99, 119 |
| Conread position: | 3-281 |
| Cow position: | chr3:62743184-62743462 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 202, 188 |
| Conread position: | 3-324 |
| Cow position: | chr3:68027016-68027337 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 3-326 |
| Cow position: | chr3:62721897-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 295, 307 |
| Conread position: | 3-326 |
| Cow position: | chr3:68027099-68027423 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 8, 284 |
| Conread position: | 3-329 |
| Cow position: | chr3:62742538-62742859 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 3-329 |
| Cow position: | chr3:68027184-68027510 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr3:68027268-68027594 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 3-329 |
| Cow position: | chr3:68045609-68045935 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 3-329 |
| Cow position: | chr3:68045692-68046019 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 3-329 |
| Cow position: | chr3:68045777-68046103 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 124, 130 |
| Conread position: | 3-329 |
| Cow position: | chr3:68045945-68046271 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 284, 291 |
| Conread position: | 4-288 |
| Cow position: | chr3:62722232-62721948 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 8-326 |
| Cow position: | chr3:62721976-62721658 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 204, 188 |
| Conread position: | 10-240 |
| Cow position: | chr3:68027527-68027757 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 10-285 |
| Cow position: | chr3:68027443-68027718 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-319 |
| Cow position: | chr3:77350897-77350591 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 10-326 |
| Cow position: | chr3:62722310-62721994 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-326 |
| Cow position: | chr3:62742294-62742609 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 280, 60 |
| Conread position: | 10-329 |
| Cow position: | chr3:62722058-62721739 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 10-329 |
| Cow position: | chr3:62742961-62743258 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 10-329 |
| Cow position: | chr3:68027359-68027678 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 271, 284 |
| Conread position: | 10-329 |
| Cow position: | chr3:68045868-68046187 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr3:68046036-68046353 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 279, 283 |
| Conread position: | 13-325 |
| Cow position: | chr3:62743110-62743422 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-323 |
| Cow position: | chr3:62722137-62721829 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 15-325 |
| Cow position: | chr3:62743033-62743338 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 280, 82 |
| Conread position: | 22-329 |
| Cow position: | chr3:62722381-62722075 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 40-329 |
| Cow position: | chr3:68045562-68045851 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 93 |
| Conread position: | 56-284 |
| Cow position: | chr3:62742754-62742983 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 128, 141 |
| Conread position: | 81-329 |
| Cow position: | chr3:68027010-68027258 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 51, 40 |
Show alignments to all cow chromosomes.