Cow genome map
| Conread name: | Ss1.1-rthg01_d21.5 |
| Conread position: | 1-324 |
| Cow position: | chr7:1014279-1014602 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-208 |
| Cow position: | chr7:18390590-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-213 |
| Cow position: | chr7:1015283-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 180, 171 |
| Conread position: | 3-245 |
| Cow position: | chr7:11600675-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 205, 182 |
| Conread position: | 3-265 |
| Cow position: | chr7:8278108-8278370 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 3-284 |
| Cow position: | chr7:8243814-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 222, 181 |
| Conread position: | 3-284 |
| Cow position: | chr7:8324909-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 55, 31 |
| Conread position: | 3-286 |
| Cow position: | chr7:8278024-8278307 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 3-286 |
| Cow position: | chr7:18390506-18390789 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-315 |
| Cow position: | chr7:1438091-1438401 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 3-323 |
| Cow position: | chr7:1015115-1015435 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 121 |
| Conread position: | 3-323 |
| Cow position: | chr7:18390422-18390742 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-325 |
| Cow position: | chr7:42878596-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr7:1014862-1015189 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 3-329 |
| Cow position: | chr7:3179789-3180115 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr7:3179957-3180283 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 191, 206 |
| Conread position: | 3-329 |
| Cow position: | chr7:3180041-3180367 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 124, 117 |
| Conread position: | 3-329 |
| Cow position: | chr7:8277604-8277930 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 3-329 |
| Cow position: | chr7:8277940-8278266 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 3-329 |
| Cow position: | chr7:8325329-8325655 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 3-329 |
| Cow position: | chr7:11601011-11600685 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 130, 119 |
| Conread position: | 3-329 |
| Cow position: | chr7:11601095-11600769 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 203, 182 |
| Conread position: | 3-329 |
| Cow position: | chr7:42878848-42878522 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-330 |
| Cow position: | chr7:18390170-18390497 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 4-329 |
| Cow position: | chr7:1014780-1015105 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 214, 210 |
| Conread position: | 4-329 |
| Cow position: | chr7:1438176-1438499 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 4-329 |
| Cow position: | chr7:3180210-3180535 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 307 |
| Conread position: | 4-331 |
| Cow position: | chr7:18390255-18390582 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-284 |
| Cow position: | chr7:8325416-8325694 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 8-329 |
| Cow position: | chr7:3179710-3180031 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 171, 167 |
| Conread position: | 9-329 |
| Cow position: | chr7:1014701-1015021 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 197, 182 |
| Conread position: | 9-329 |
| Cow position: | chr7:42879262-42878942 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-214 |
| Cow position: | chr7:1440073-1440277 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-284 |
| Cow position: | chr7:1439989-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-323 |
| Cow position: | chr7:1439485-1439800 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 10-323 |
| Cow position: | chr7:1439651-1439967 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 26, 117 |
| Conread position: | 10-326 |
| Cow position: | chr7:11601172-11600856 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-328 |
| Cow position: | chr7:1439823-1440139 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 10-329 |
| Cow position: | chr7:1014540-1014853 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 10-329 |
| Cow position: | chr7:1014954-1015273 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 300, 272 |
| Conread position: | 10-329 |
| Cow position: | chr7:1015038-1015357 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 203, 198 |
| Conread position: | 10-329 |
| Cow position: | chr7:1439906-1440224 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 66 |
| Conread position: | 10-329 |
| Cow position: | chr7:3179880-3180199 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 10-329 |
| Cow position: | chr7:3180132-3180451 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr7:3180300-3180619 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 288, 292 |
| Conread position: | 10-329 |
| Cow position: | chr7:3180384-3180703 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr7:3180468-3180787 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 10-329 |
| Cow position: | chr7:3180552-3180870 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 285, 238 |
| Conread position: | 10-329 |
| Cow position: | chr7:8277359-8277678 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 10-329 |
| Cow position: | chr7:8324748-8325067 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 10-329 |
| Cow position: | chr7:8325168-8325487 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 10-329 |
| Cow position: | chr7:8325756-8326075 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 10-329 |
| Cow position: | chr7:11600752-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 316, 0 |
| Conread position: | 10-329 |
| Cow position: | chr7:11600836-11600517 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 208, 193 |
| Conread position: | 10-329 |
| Cow position: | chr7:42878673-42878354 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr7:42878757-42878438 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 10-329 |
| Cow position: | chr7:42878925-42878606 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 193 |
| Conread position: | 10-329 |
| Cow position: | chr7:42879009-42878690 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr7:42879093-42878774 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr7:42879177-42878858 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-329 |
| Cow position: | chr7:1438349-1438667 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-329 |
| Cow position: | chr7:18390010-18390328 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 12-325 |
| Cow position: | chr7:1438266-1438579 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 289, 301 |
| Conread position: | 12-329 |
| Cow position: | chr7:42879343-42879026 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 14-329 |
| Cow position: | chr7:18390349-18390664 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 15-329 |
| Cow position: | chr7:11601250-11600937 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 197, 23 |
| Conread position: | 15-329 |
| Cow position: | chr7:42879424-42879110 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 16-284 |
| Cow position: | chr7:1015212-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 16-284 |
| Cow position: | chr7:1438438-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 117, 136 |
| Conread position: | 23-285 |
| Cow position: | chr7:1014217-1014479 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 45-329 |
| Cow position: | chr7:1014653-1014937 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 46-329 |
| Cow position: | chr7:11600884-11600601 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-329 |
| Cow position: | chr7:8277900-8278182 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 48-329 |
| Cow position: | chr7:8325037-8325319 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 176 |
| Conread position: | 48-329 |
| Cow position: | chr7:8325541-8325823 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 76 |
| Conread position: | 50-329 |
| Cow position: | chr7:18390133-18390412 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 57-285 |
| Cow position: | chr7:8325887-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 170, 139 |
| Conread position: | 57-288 |
| Cow position: | chr7:8325299-8325530 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 168, 157 |
| Conread position: | 57-329 |
| Cow position: | chr7:1439448-1439723 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 231, 139 |
| Conread position: | 58-288 |
| Cow position: | chr7:11434508-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-331 |
| Cow position: | chr7:1439452-1439637 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 136, 0 |
Show alignments to all cow chromosomes.