Cow genome map
| Conread name: | Ss1.1-rthg01_d21.5 |
| Conread position: | 1-326 |
| Cow position: | chr8:46816975-46817300 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 3-321 |
| Cow position: | chr8:45201782-45202093 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 266, 196 |
| Conread position: | 3-329 |
| Cow position: | chr8:45201026-45201352 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr8:45201110-45201436 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr8:45201278-45201604 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr8:45201446-45201772 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr8:45201614-45201940 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 195 |
| Conread position: | 3-329 |
| Cow position: | chr8:46815882-46816211 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 65, 196 |
| Conread position: | 3-329 |
| Cow position: | chr8:46816053-46816379 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 3-329 |
| Cow position: | chr8:46816473-46816799 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr8:46816893-46817219 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr8:48407202-48406876 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 3-329 |
| Cow position: | chr8:48407370-48407044 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 215, 200 |
| Conread position: | 3-329 |
| Cow position: | chr8:48407454-48407128 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 139 |
| Conread position: | 3-329 |
| Cow position: | chr8:55580998-55581324 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chr8:55581082-55581408 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 301, 286 |
| Conread position: | 3-329 |
| Cow position: | chr8:55581250-55581576 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 193, 207 |
| Conread position: | 4-270 |
| Cow position: | chr8:48407033-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 4-329 |
| Cow position: | chr8:45201195-45201520 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-329 |
| Cow position: | chr8:48407537-48407212 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 6-329 |
| Cow position: | chr8:48406947-48406624 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 122, 116 |
| Conread position: | 8-323 |
| Cow position: | chr8:55581423-55581738 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 298, 302 |
| Conread position: | 9-329 |
| Cow position: | chr8:45200948-45201268 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-329 |
| Cow position: | chr8:55580920-55581240 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-329 |
| Cow position: | chr8:55581172-55581492 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 302 |
| Conread position: | 9-329 |
| Cow position: | chr8:55581340-55581660 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 10-273 |
| Cow position: | chr8:48407615-48407352 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 10-325 |
| Cow position: | chr8:45201705-45202029 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 10-326 |
| Cow position: | chr8:46817068-46817384 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 10-326 |
| Cow position: | chr8:48407111-48406795 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 10-328 |
| Cow position: | chr8:48406607-48406289 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 291, 285 |
| Conread position: | 10-329 |
| Cow position: | chr8:45201369-45201688 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr8:45201537-45201856 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr8:46816144-46816463 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 10-329 |
| Cow position: | chr8:46816228-46816547 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr8:46816396-46816715 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr8:46816648-46816967 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 131, 126 |
| Conread position: | 10-329 |
| Cow position: | chr8:46816732-46817051 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 283, 276 |
| Conread position: | 10-329 |
| Cow position: | chr8:46816816-46817135 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 127 |
| Conread position: | 10-329 |
| Cow position: | chr8:48406691-48406372 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chr8:48406859-48406540 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 10-329 |
| Cow position: | chr8:48407279-48406960 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 203, 193 |
| Conread position: | 10-329 |
| Cow position: | chr8:55580753-55581072 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 10-330 |
| Cow position: | chr8:46816564-46816884 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-329 |
| Cow position: | chr8:45200786-45201100 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 15-329 |
| Cow position: | chr8:46815981-46816295 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-318 |
| Cow position: | chr8:6958059-6957758 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 16-329 |
| Cow position: | chr8:46816318-46816631 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-351 |
| Cow position: | chr8:55580844-55581175 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 195, 179 |
| Conread position: | 19-274 |
| Cow position: | chr8:48406514-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 194, 205 |
| Conread position: | 58-329 |
| Cow position: | chr8:45200913-45201184 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-329 |
| Cow position: | chr8:48407645-48407380 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-329 |
| Cow position: | chr8:48406707-48406456 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.