Cow genome map
| Conread name: | Ss1.1-rthg01_d21.5 |
| Conread position: | 3-262 |
| Cow position: | chrX:29044916-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-284 |
| Cow position: | chrX:29045735-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-323 |
| Cow position: | chrX:13826856-13826536 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 191, 215 |
| Conread position: | 3-326 |
| Cow position: | chrX:25324823-25324500 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 205, 193 |
| Conread position: | 3-329 |
| Cow position: | chrX:25309730-25310056 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 118 |
| Conread position: | 3-329 |
| Cow position: | chrX:25309814-25310140 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chrX:25309898-25310224 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 3-329 |
| Cow position: | chrX:25309982-25310308 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 206 |
| Conread position: | 3-329 |
| Cow position: | chrX:25310066-25310392 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 193 |
| Conread position: | 3-329 |
| Cow position: | chrX:25310150-25310476 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 3-329 |
| Cow position: | chrX:25310234-25310560 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chrX:25324907-25324581 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chrX:25325495-25325169 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 200 |
| Conread position: | 3-329 |
| Cow position: | chrX:29045000-29044674 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chrX:29045168-29044842 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-329 |
| Cow position: | chrX:29045819-29045493 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 3-331 |
| Cow position: | chrX:25324487-25324163 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 7-263 |
| Cow position: | chrX:25310322-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 201, 184 |
| Conread position: | 8-329 |
| Cow position: | chrX:29045247-29044926 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-329 |
| Cow position: | chrX:29045331-29045010 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-329 |
| Cow position: | chrX:25324985-25324665 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-351 |
| Cow position: | chrX:13826934-13826595 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 10-181 |
| Cow position: | chrX:29044825-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-257 |
| Cow position: | chrX:13826765-13826518 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 10-325 |
| Cow position: | chrX:25324564-25324249 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 10-325 |
| Cow position: | chrX:25325152-25324837 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 278 |
| Conread position: | 10-327 |
| Cow position: | chrX:25324648-25324331 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chrX:25324732-25324413 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 10-329 |
| Cow position: | chrX:25325236-25324917 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 131, 127 |
| Conread position: | 10-329 |
| Cow position: | chrX:25325320-25325001 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 10-329 |
| Cow position: | chrX:25325404-25325085 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-329 |
| Cow position: | chrX:25325572-25325253 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 183 |
| Conread position: | 10-329 |
| Cow position: | chrX:25325740-25325421 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-329 |
| Cow position: | chrX:29045892-29045577 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 128, 12 |
| Conread position: | 12-329 |
| Cow position: | chrX:25325822-25325505 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 15-282 |
| Cow position: | chrX:29045639-29045372 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 254, 248 |
| Conread position: | 16-351 |
| Cow position: | chrX:25325062-25324730 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 19-323 |
| Cow position: | chrX:14181282-14180978 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 19-329 |
| Cow position: | chrX:29045068-29044758 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-329 |
| Cow position: | chrX:29045383-29045094 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 177, 21 |
| Conread position: | 57-329 |
| Cow position: | chrX:25309700-25309972 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 142 |
| Conread position: | 57-329 |
| Cow position: | chrX:25325609-25325337 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.