Cow genome map

Conread name: Ss1.1-rthg05_k4.5

Conread position: 343-580
Cow position: chr12:37169771-37170006 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 27

Conread position: 347-566
Cow position: chr12:14986924-14986704 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 21, 58

Conread position: 357-573
Cow position: chr12:5554171-5554386 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 48

Conread position: 357-580
Cow position: chr12:18518838-18518613 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 47

Conread position: 359-580
Cow position: chr12:7902640-7902865 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 46

Conread position: 359-580
Cow position: chr12:18123831-18123609 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 46

Conread position: 363-580
Cow position: chr12:12233041-12232823 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 68, 34

Conread position: 363-580
Cow position: chr12:15089677-15089456 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 11, 42

Conread position: 375-572
Cow position: chr12:33949048-33948853 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 16

Conread position: 536-754
Cow position: chr12:18935946-18936164 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 126
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 558-754
Cow position: chr12:35547990-35547793 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 560-756
Cow position: chr12:24205676-24205870 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 118, 102

Conread position: 578-754
Cow position: chr12:13043082-13042906 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 111, 116

Conread position: 578-756
Cow position: chr12:24029319-24029145 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 579-730
Cow position: chr12:15231195-15231346 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-733
Cow position: chr12:45145213-45145367 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-737
Cow position: chr12:34176525-34176683 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-742
Cow position: chr12:23138168-23138005 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-744
Cow position: chr12:1511603-1511438 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:62047-61872 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:258890-259065 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:1007176-1007352 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 107, 0

Conread position: 579-754
Cow position: chr12:1056347-1056173 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 579-754
Cow position: chr12:1438070-1438244 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 139, 0

Conread position: 579-754
Cow position: chr12:2228731-2228906 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:5107218-5107393 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:7674062-7674237 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:8839414-8839589 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:10075822-10075994 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 579-754
Cow position: chr12:12928746-12928575 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 579-754
Cow position: chr12:14423510-14423685 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:15925591-15925418 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 107, 72

Conread position: 579-754
Cow position: chr12:16302178-16302003 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:17718461-17718636 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:21452817-21452642 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:21665296-21665471 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:21888882-21888707 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:27958365-27958190 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:31027659-31027485 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 579-754
Cow position: chr12:31829289-31829114 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:32340096-32339921 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:33925537-33925362 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:36445547-36445722 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr12:40306459-40306634 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr12:21314269-21314094 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 84, 71

Conread position: 579-755
Cow position: chr12:24557740-24557913 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 579-755
Cow position: chr12:32656709-32656886 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 159, 0

Conread position: 579-756
Cow position: chr12:3094475-3094285 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 579-756
Cow position: chr12:3717113-3716936 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:5110900-5110727 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 579-756
Cow position: chr12:5713124-5713301 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:7885727-7885545 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 128, 0

Conread position: 579-756
Cow position: chr12:7961581-7961409 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 90, 25

Conread position: 579-756
Cow position: chr12:8841895-8841721 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 579-756
Cow position: chr12:9988526-9988350 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 163

Conread position: 579-756
Cow position: chr12:10358856-10359033 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:10931245-10931422 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:12754996-12754819 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:17981569-17981733 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 579-756
Cow position: chr12:18585833-18586010 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:19198196-19198370 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 145
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 166, 131

Conread position: 579-756
Cow position: chr12:21211944-21212121 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:21251153-21250977 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 579-756
Cow position: chr12:21432500-21432678 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 579-756
Cow position: chr12:21904527-21904696 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 579-756
Cow position: chr12:22748375-22748553 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 64, 0

Conread position: 579-756
Cow position: chr12:22979731-22979556 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr12:23294395-23294571 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 136, 0

Conread position: 579-756
Cow position: chr12:25148457-25148281 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 101, 39

Conread position: 579-756
Cow position: chr12:25266173-25265996 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:25313553-25313376 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:27506489-27506312 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:27929631-27929454 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:27994261-27994438 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:29446970-29447144 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 125, 48

Conread position: 579-756
Cow position: chr12:30686902-30687079 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 68, 78

Conread position: 579-756
Cow position: chr12:32147469-32147292 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:33296793-33296967 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 579-756
Cow position: chr12:36287852-36287678 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr12:36569184-36569008 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 137, 164

Conread position: 579-756
Cow position: chr12:37562167-37562342 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 0

Conread position: 579-756
Cow position: chr12:38893524-38893701 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:42232470-42232647 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:43681165-43681342 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr12:46111957-46111780 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 580-724
Cow position: chr12:28737687-28737830 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 580-756
Cow position: chr12:21497732-21497559 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 165, 66

Conread position: 580-756
Cow position: chr12:28013070-28012894 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 580-756
Cow position: chr12:32011616-32011440 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 581-713
Cow position: chr12:47803335-47803465 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 81, 0

Conread position: 581-756
Cow position: chr12:8773829-8774001 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 581-756
Cow position: chr12:26870094-26869920 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 150, 0

Conread position: 581-756
Cow position: chr12:32757859-32758034 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 582-754
Cow position: chr12:22517689-22517519 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 144, 0

Conread position: 582-756
Cow position: chr12:21719014-21718841 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 152, 0

Conread position: 582-756
Cow position: chr12:36213441-36213615 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 156, 165

Conread position: 588-753
Cow position: chr12:12178067-12177907 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 15, 63

Conread position: 589-756
Cow position: chr12:19496204-19496040 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 113, 130

Conread position: 590-754
Cow position: chr12:43602085-43601921 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 590-756
Cow position: chr12:31261246-31261072 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 598-756
Cow position: chr12:34176734-34176892 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 606-722
Cow position: chr12:29413051-29412935 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 606-755
Cow position: chr12:19868401-19868551 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 146, 0

Show alignments to all cow chromosomes.