Cow genome map

Conread name: Ss1.1-rthg05_k4.5

Conread position: 337-580
Cow position: chr17:5422808-5423050 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 24, 72

Conread position: 341-572
Cow position: chr17:32332832-32333063 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 120, 22

Conread position: 346-580
Cow position: chr17:32138160-32138405 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 103, 58

Conread position: 347-572
Cow position: chr17:12959358-12959134 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 97

Conread position: 350-580
Cow position: chr17:12325519-12325746 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 24

Conread position: 352-580
Cow position: chr17:25511492-25511265 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 95, 52

Conread position: 356-572
Cow position: chr17:9824913-9824697 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 100, 48

Conread position: 357-572
Cow position: chr17:18934502-18934288 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 35

Conread position: 357-579
Cow position: chr17:29995190-29995416 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 154
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 75, 47

Conread position: 358-580
Cow position: chr17:908985-908760 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 48

Conread position: 359-572
Cow position: chr17:21039800-21039585 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 46

Conread position: 359-572
Cow position: chr17:33288415-33288629 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 102, 45

Conread position: 403-580
Cow position: chr17:18108886-18109065 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 122

Conread position: 557-756
Cow position: chr17:3237425-3237626 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 16, 33

Conread position: 578-756
Cow position: chr17:8222742-8222920 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-722
Cow position: chr17:15128424-15128567 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-729
Cow position: chr17:33934802-33934651 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 146, 0

Conread position: 579-729
Cow position: chr17:41013923-41014073 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-737
Cow position: chr17:5546247-5546088 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 579-742
Cow position: chr17:1654724-1654563 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 579-742
Cow position: chr17:14865346-14865183 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-743
Cow position: chr17:29212672-29212834 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 102, 20

Conread position: 579-743
Cow position: chr17:29897681-29897842 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 50

Conread position: 579-743
Cow position: chr17:30182542-30182378 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:1970189-1970364 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:3305613-3305789 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 145
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 100, 0

Conread position: 579-754
Cow position: chr17:5638851-5638675 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 0

Conread position: 579-754
Cow position: chr17:5672479-5672303 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 0

Conread position: 579-754
Cow position: chr17:5806451-5806276 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:6612060-6612235 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:8994298-8994127 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 579-754
Cow position: chr17:14932829-14932654 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:15708955-15708780 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:17957635-17957810 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:20225640-20225815 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:20390812-20390987 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:20546175-20546350 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:22249214-22249039 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:26829706-26829531 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr17:37528934-37528759 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr17:18100036-18099860 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr17:21304326-21304503 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 73, 0

Conread position: 579-756
Cow position: chr17:51061-50885 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 94, 84

Conread position: 579-756
Cow position: chr17:184185-184362 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:4480844-4480668 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 113

Conread position: 579-756
Cow position: chr17:4635737-4635560 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:5043555-5043380 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 147

Conread position: 579-756
Cow position: chr17:11084097-11083920 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:13921280-13921446 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 579-756
Cow position: chr17:14029308-14029132 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 104, 0

Conread position: 579-756
Cow position: chr17:14212979-14212803 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 0

Conread position: 579-756
Cow position: chr17:15117855-15118032 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:15140301-15140124 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:15328319-15328496 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:15438829-15439006 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:15809025-15809202 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:17128043-17128220 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:18591460-18591636 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 21, 66

Conread position: 579-756
Cow position: chr17:18777792-18777615 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 114, 104

Conread position: 579-756
Cow position: chr17:20084775-20084595 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 97, 0

Conread position: 579-756
Cow position: chr17:20094119-20093944 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 579-756
Cow position: chr17:21770718-21770895 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:22563183-22563359 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 132, 0

Conread position: 579-756
Cow position: chr17:23321378-23321205 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 579-756
Cow position: chr17:24026945-24026768 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:24785228-24785405 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:25739334-25739511 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:29471477-29471652 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr17:29950253-29950427 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr17:33792121-33792287 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 107, 59

Conread position: 579-756
Cow position: chr17:34236213-34236036 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr17:36790108-36790280 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 82, 0

Conread position: 579-756
Cow position: chr17:43471552-43471376 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 580-738
Cow position: chr17:20091567-20091416 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 580-756
Cow position: chr17:1457337-1457165 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 580-756
Cow position: chr17:2583431-2583607 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 580-756
Cow position: chr17:38991792-38991967 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 91, 0

Conread position: 581-743
Cow position: chr17:2245025-2244864 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 31, 0

Conread position: 581-743
Cow position: chr17:10270312-10270151 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 581-743
Cow position: chr17:27791742-27791580 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 581-755
Cow position: chr17:4085107-4085281 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 581-756
Cow position: chr17:2265229-2265403 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 102, 0

Conread position: 581-756
Cow position: chr17:4210969-4211144 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 110

Conread position: 581-756
Cow position: chr17:29041859-29041686 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 75, 0

Conread position: 581-756
Cow position: chr17:29156418-29156588 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 0

Conread position: 581-756
Cow position: chr17:29824921-29824747 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 90, 0

Conread position: 581-756
Cow position: chr17:33289922-33289761 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 581-756
Cow position: chr17:37415848-37415673 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 128, 123

Conread position: 582-756
Cow position: chr17:1672340-1672513 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 121, 0

Conread position: 582-756
Cow position: chr17:14871724-14871898 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 582-756
Cow position: chr17:44481885-44482063 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 108, 157

Conread position: 585-743
Cow position: chr17:3780699-3780858 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 588-756
Cow position: chr17:2839072-2839237 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 68, 0

Conread position: 589-725
Cow position: chr17:38629204-38629338 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 114
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 126, 0

Conread position: 590-754
Cow position: chr17:39824145-39823981 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 590-756
Cow position: chr17:13674433-13674270 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 591-754
Cow position: chr17:36284317-36284480 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 599-745
Cow position: chr17:18324343-18324200 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 600-754
Cow position: chr17:2521381-2521227 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 605-756
Cow position: chr17:11913685-11913534 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 128
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 610-754
Cow position: chr17:21716531-21716675 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 104
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 628-756
Cow position: chr17:8449800-8449926 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 631-756
Cow position: chr17:29083267-29083392 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.