Cow genome map

Conread name: Ss1.1-rthg05_k4.5

Conread position: 324-572
Cow position: chr18:31082139-31082394 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 175
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 48

Conread position: 328-578
Cow position: chr18:32251965-32252221 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 173
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 107, 74

Conread position: 331-572
Cow position: chr18:23630418-23630650 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 331-580
Cow position: chr18:35534956-35535201 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 134, 32

Conread position: 338-572
Cow position: chr18:7109321-7109084 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 26

Conread position: 346-572
Cow position: chr18:50632263-50632488 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 84, 58

Conread position: 346-580
Cow position: chr18:20641321-20641551 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 10

Conread position: 356-580
Cow position: chr18:4884347-4884572 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 153
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 112, 48

Conread position: 360-580
Cow position: chr18:42479411-42479641 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 8, 45

Conread position: 363-572
Cow position: chr18:2146427-2146625 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 364-580
Cow position: chr18:49015280-49015074 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 206, 40

Conread position: 375-567
Cow position: chr18:20126445-20126266 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 375-572
Cow position: chr18:9366075-9365873 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 86, 29

Conread position: 550-756
Cow position: chr18:30035498-30035291 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 54

Conread position: 579-713
Cow position: chr18:16471917-16471782 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 64, 0

Conread position: 579-713
Cow position: chr18:23676468-23676334 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-724
Cow position: chr18:6881994-6881849 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-724
Cow position: chr18:29075154-29075297 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 579-732
Cow position: chr18:17381074-17381227 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-737
Cow position: chr18:22182278-22182120 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-738
Cow position: chr18:26844820-26844666 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 72

Conread position: 579-743
Cow position: chr18:17323641-17323806 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 118, 0

Conread position: 579-743
Cow position: chr18:24619690-24619854 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-743
Cow position: chr18:33271899-33272065 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 77, 11

Conread position: 579-743
Cow position: chr18:35444107-35443943 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:11869748-11869923 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:13270171-13270346 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:18215752-18215577 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:19461541-19461716 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:19468793-19468968 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:24037585-24037410 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:29078998-29079173 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:30606957-30607132 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:31139013-31139188 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:32436840-32436665 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 107, 48

Conread position: 579-754
Cow position: chr18:36771271-36771095 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 149
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 579-754
Cow position: chr18:37583196-37583022 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 144, 0

Conread position: 579-754
Cow position: chr18:50835124-50834949 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:51602404-51602229 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:51690058-51690233 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr18:54047140-54047315 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr18:19355774-19355950 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr18:36233827-36233650 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 121, 0

Conread position: 579-755
Cow position: chr18:40195374-40195549 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 579-755
Cow position: chr18:52629997-52629820 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 143, 0

Conread position: 579-756
Cow position: chr18:603203-603026 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:2853529-2853350 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 88, 25

Conread position: 579-756
Cow position: chr18:5536233-5536411 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 159, 0

Conread position: 579-756
Cow position: chr18:6104142-6103967 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 24, 149

Conread position: 579-756
Cow position: chr18:10221423-10221246 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:10291992-10292169 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:12269416-12269592 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 166, 14

Conread position: 579-756
Cow position: chr18:14128025-14127848 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:14965546-14965723 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:16094146-16094323 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:16173352-16173175 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:16463385-16463208 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:21303762-21303940 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 108, 0

Conread position: 579-756
Cow position: chr18:23688433-23688610 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:23701537-23701365 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 136, 0

Conread position: 579-756
Cow position: chr18:23802284-23802461 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:26243197-26243020 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 101, 92

Conread position: 579-756
Cow position: chr18:28969028-28968851 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:29071682-29071859 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:32164670-32164493 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:32859761-32859585 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 111, 104

Conread position: 579-756
Cow position: chr18:36457519-36457692 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 98, 57

Conread position: 579-756
Cow position: chr18:36511895-36512072 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:36776537-36776714 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 55

Conread position: 579-756
Cow position: chr18:37509229-37509400 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 579-756
Cow position: chr18:37732950-37733127 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 107, 112

Conread position: 579-756
Cow position: chr18:41837829-41837652 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 90

Conread position: 579-756
Cow position: chr18:43430268-43430444 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 579-756
Cow position: chr18:43472859-43473035 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 162, 0

Conread position: 579-756
Cow position: chr18:50093183-50093006 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:51459580-51459403 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr18:51663438-51663612 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 579-756
Cow position: chr18:53872154-53872330 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 147
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 66, 0

Conread position: 580-743
Cow position: chr18:17096072-17096233 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 127, 61

Conread position: 580-756
Cow position: chr18:27539694-27539870 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 581-716
Cow position: chr18:12241110-12241241 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 101, 31

Conread position: 581-743
Cow position: chr18:44261331-44261493 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 138
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 581-756
Cow position: chr18:22791159-22790982 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 145
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 130, 38

Conread position: 581-756
Cow position: chr18:29797822-29797647 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 581-756
Cow position: chr18:33406571-33406746 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 143
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 581-756
Cow position: chr18:51697909-51698078 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 581-756
Cow position: chr18:55554514-55554689 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 582-737
Cow position: chr18:3362328-3362480 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 582-754
Cow position: chr18:8257340-8257510 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 582-756
Cow position: chr18:14479348-14479521 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 157, 152

Conread position: 582-756
Cow position: chr18:15172119-15172286 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 582-756
Cow position: chr18:27990021-27990195 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 583-756
Cow position: chr18:23659629-23659457 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 135, 0

Conread position: 583-756
Cow position: chr18:47745018-47745191 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 589-755
Cow position: chr18:16025388-16025221 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 589-756
Cow position: chr18:17335469-17335303 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 106, 62

Conread position: 590-733
Cow position: chr18:3902245-3902102 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 32

Conread position: 594-744
Cow position: chr18:12201255-12201105 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 595-742
Cow position: chr18:10890036-10890182 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 599-756
Cow position: chr18:16390925-16390768 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.