Cow genome map

Conread name: Ss1.1-rthg05_k4.5

Conread position: 333-580
Cow position: chr19:23756534-23756775 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 237, 71

Conread position: 340-580
Cow position: chr19:34420617-34420382 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 116, 16

Conread position: 346-572
Cow position: chr19:7147852-7148087 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 103, 58

Conread position: 354-579
Cow position: chr19:28810120-28810349 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 50

Conread position: 357-566
Cow position: chr19:40126972-40127184 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 111, 47

Conread position: 357-580
Cow position: chr19:33575712-33575491 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 182, 47

Conread position: 358-572
Cow position: chr19:24062466-24062253 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 46

Conread position: 358-580
Cow position: chr19:10238928-10238704 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 107, 46

Conread position: 363-580
Cow position: chr19:38732325-38732106 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 111, 41

Conread position: 375-571
Cow position: chr19:21378291-21378492 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 29

Conread position: 379-578
Cow position: chr19:34654439-34654641 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 21

Conread position: 578-756
Cow position: chr19:405413-405592 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 578-756
Cow position: chr19:39182274-39182096 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-721
Cow position: chr19:32952093-32952230 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 579-728
Cow position: chr19:24734410-24734559 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-729
Cow position: chr19:35381807-35381652 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 579-732
Cow position: chr19:16316940-16316787 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-732
Cow position: chr19:47670177-47670330 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 125
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 579-733
Cow position: chr19:35621796-35621949 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 128
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 28, 0

Conread position: 579-737
Cow position: chr19:1564529-1564371 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-743
Cow position: chr19:6374-6535 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 579-743
Cow position: chr19:30473882-30473711 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 80, 150

Conread position: 579-743
Cow position: chr19:46821123-46821283 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 136
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 19, 0

Conread position: 579-743
Cow position: chr19:55843271-55843435 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-745
Cow position: chr19:3086060-3086227 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 159, 0

Conread position: 579-745
Cow position: chr19:42648117-42647953 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 159, 36

Conread position: 579-754
Cow position: chr19:41600-41775 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:5026925-5026750 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:9118077-9118252 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:10195680-10195855 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:10613495-10613670 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:19389101-19389276 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:20611601-20611776 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:22391484-22391659 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:29393609-29393784 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:30037640-30037465 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:33119457-33119282 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:33528114-33528289 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:33573450-33573278 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 579-754
Cow position: chr19:39339801-39339626 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 112

Conread position: 579-754
Cow position: chr19:41204960-41204785 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:43148848-43149023 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:48626326-48626501 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:55164390-55164215 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr19:55378162-55378335 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 579-755
Cow position: chr19:29366795-29366971 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr19:29624303-29624479 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr19:44839902-44839731 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 166, 104

Conread position: 579-756
Cow position: chr19:436071-435894 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr19:776780-776956 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 121, 0

Conread position: 579-756
Cow position: chr19:1581642-1581465 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 107

Conread position: 579-756
Cow position: chr19:1663339-1663516 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 145
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr19:2270034-2269857 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr19:2588456-2588631 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 144
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 74, 0

Conread position: 579-756
Cow position: chr19:4388850-4389024 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 89, 0

Conread position: 579-756
Cow position: chr19:4447481-4447659 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 145
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 84, 0

Conread position: 579-756
Cow position: chr19:5732762-5732939 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 41

Conread position: 579-756
Cow position: chr19:5902294-5902471 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr19:7064951-7065121 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 0

Conread position: 579-756
Cow position: chr19:7472327-7472503 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 104, 0

Conread position: 579-756
Cow position: chr19:9098879-9099060 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 90, 83

Conread position: 579-756
Cow position: chr19:9704919-9704748 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 97, 57

Conread position: 579-756
Cow position: chr19:12652137-12652319 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 579-756
Cow position: chr19:14156836-14156663 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 60, 80

Conread position: 579-756
Cow position: chr19:17883232-17883408 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 139, 0

Conread position: 579-756
Cow position: chr19:20403551-20403727 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 92, 0

Conread position: 579-756
Cow position: chr19:22512512-22512688 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 132, 0

Conread position: 579-756
Cow position: chr19:23488028-23488203 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 579-756
Cow position: chr19:28450092-28450266 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 54

Conread position: 579-756
Cow position: chr19:31781838-31782013 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 579-756
Cow position: chr19:33594232-33594053 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 169

Conread position: 579-756
Cow position: chr19:33876683-33876860 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr19:33944834-33945010 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 579-756
Cow position: chr19:35781143-35781320 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr19:35843121-35843298 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 57

Conread position: 579-756
Cow position: chr19:39394468-39394645 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 89

Conread position: 579-756
Cow position: chr19:40016320-40016145 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 73

Conread position: 579-756
Cow position: chr19:55421314-55421490 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 580-756
Cow position: chr19:55217073-55217249 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 159, 154

Conread position: 581-733
Cow position: chr19:42724935-42725079 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 0

Conread position: 581-739
Cow position: chr19:15766007-15766159 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 128
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 581-755
Cow position: chr19:25085477-25085641 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 65, 0

Conread position: 581-756
Cow position: chr19:27082145-27081971 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 82, 0

Conread position: 581-756
Cow position: chr19:28596645-28596820 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 581-756
Cow position: chr19:46873756-46873581 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 107, 112

Conread position: 581-756
Cow position: chr19:50561335-50561508 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 589-755
Cow position: chr19:2019486-2019320 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 138, 92

Conread position: 598-754
Cow position: chr19:3406466-3406622 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 599-756
Cow position: chr19:9543374-9543218 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 599-756
Cow position: chr19:27613216-27613059 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 602-754
Cow position: chr19:7078546-7078698 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 604-756
Cow position: chr19:42866757-42866909 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 605-756
Cow position: chr19:20672302-20672151 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 606-755
Cow position: chr19:19172950-19173102 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 21

Conread position: 618-716
Cow position: chr19:15720567-15720469 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.