Cow genome map

Conread name: Ss1.1-rthg05_k4.5

Conread position: 332-580
Cow position: chr23:24966227-24966482 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 14

Conread position: 334-580
Cow position: chr23:20539609-20539366 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 164
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 236, 70

Conread position: 335-566
Cow position: chr23:27849222-27848992 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 121, 58

Conread position: 346-558
Cow position: chr23:9131746-9131957 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 59

Conread position: 346-580
Cow position: chr23:12363400-12363637 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 59

Conread position: 347-572
Cow position: chr23:1883613-1883384 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 61

Conread position: 347-573
Cow position: chr23:5426652-5426422 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 93, 9

Conread position: 347-580
Cow position: chr23:8698643-8698401 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 62

Conread position: 357-580
Cow position: chr23:16880963-16881182 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 213, 47

Conread position: 358-572
Cow position: chr23:7709989-7709780 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 10, 47

Conread position: 358-575
Cow position: chr23:40500891-40501112 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 109, 46

Conread position: 363-580
Cow position: chr23:24685441-24685225 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 88, 41

Conread position: 365-580
Cow position: chr23:22587078-22586861 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 42

Conread position: 578-756
Cow position: chr23:24119714-24119892 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-729
Cow position: chr23:10937142-10936992 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-737
Cow position: chr23:3417168-3417010 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-739
Cow position: chr23:14216064-14215906 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 579-743
Cow position: chr23:20025094-20025258 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-743
Cow position: chr23:20389861-20389698 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 136, 0

Conread position: 579-743
Cow position: chr23:30243662-30243825 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 139, 0

Conread position: 579-754
Cow position: chr23:671332-671507 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:954636-954465 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 108, 48

Conread position: 579-754
Cow position: chr23:2409051-2408877 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 579-754
Cow position: chr23:3550034-3549859 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:3730425-3730250 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:5396420-5396245 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:5441078-5441252 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 131, 0

Conread position: 579-754
Cow position: chr23:10679673-10679498 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:11070237-11070412 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:11078438-11078614 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 62, 135

Conread position: 579-754
Cow position: chr23:11079544-11079720 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 89

Conread position: 579-754
Cow position: chr23:16999605-16999775 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 141, 10

Conread position: 579-754
Cow position: chr23:21008444-21008269 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:25351520-25351695 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:28221861-28222037 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 112, 104

Conread position: 579-754
Cow position: chr23:29625134-29625315 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 134, 0

Conread position: 579-754
Cow position: chr23:29935434-29935610 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 120, 0

Conread position: 579-754
Cow position: chr23:31605588-31605763 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr23:31704055-31704230 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 107, 112

Conread position: 579-754
Cow position: chr23:39745024-39745195 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 145, 0

Conread position: 579-754
Cow position: chr23:41015089-41015264 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr23:3285919-3286095 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr23:3302015-3302191 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr23:5871236-5871060 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr23:6593764-6593593 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 65, 0

Conread position: 579-755
Cow position: chr23:26828413-26828585 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 136, 0

Conread position: 579-755
Cow position: chr23:40773490-40773664 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr23:771331-771154 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 114, 104

Conread position: 579-756
Cow position: chr23:1048713-1048536 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 89

Conread position: 579-756
Cow position: chr23:1311411-1311233 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 10

Conread position: 579-756
Cow position: chr23:1326152-1325978 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 579-756
Cow position: chr23:1959287-1959464 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:2180686-2180510 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 49, 42

Conread position: 579-756
Cow position: chr23:3877982-3877806 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 84

Conread position: 579-756
Cow position: chr23:4532537-4532360 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 159, 171

Conread position: 579-756
Cow position: chr23:4637195-4637018 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:4891856-4892033 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:6173858-6173683 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 83, 0

Conread position: 579-756
Cow position: chr23:7359621-7359793 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 144
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 48, 0

Conread position: 579-756
Cow position: chr23:8707551-8707728 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:11343657-11343834 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:11377157-11376980 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:14265507-14265680 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 148, 0

Conread position: 579-756
Cow position: chr23:14959791-14959616 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 579-756
Cow position: chr23:14970791-14970615 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 162, 0

Conread position: 579-756
Cow position: chr23:15180119-15180296 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:15528747-15528924 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:15567846-15567669 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:17403773-17403951 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 145
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 16, 0

Conread position: 579-756
Cow position: chr23:19493009-19493186 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:20171041-20170868 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 579-756
Cow position: chr23:21277473-21277298 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 579-756
Cow position: chr23:21351788-21351614 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 579-756
Cow position: chr23:21772750-21772572 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 0

Conread position: 579-756
Cow position: chr23:22144149-22143973 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 107, 42

Conread position: 579-756
Cow position: chr23:26318444-26318618 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 77, 0

Conread position: 579-756
Cow position: chr23:28915493-28915667 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 136, 0

Conread position: 579-756
Cow position: chr23:29042943-29043121 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 138, 0

Conread position: 579-756
Cow position: chr23:29460091-29459916 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 109

Conread position: 579-756
Cow position: chr23:30623337-30623163 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 68, 28

Conread position: 579-756
Cow position: chr23:30634434-30634257 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 159, 171

Conread position: 579-756
Cow position: chr23:31772106-31771931 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr23:31833839-31833666 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 107, 0

Conread position: 579-756
Cow position: chr23:36028092-36027915 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr23:37199353-37199173 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 580-756
Cow position: chr23:27313006-27313182 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 580-756
Cow position: chr23:38027786-38027611 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 581-756
Cow position: chr23:16056862-16057036 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 581-756
Cow position: chr23:28987505-28987679 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 168, 0

Conread position: 581-756
Cow position: chr23:34347036-34347211 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 582-756
Cow position: chr23:2320781-2320610 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 583-755
Cow position: chr23:1322231-1322060 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 80

Conread position: 583-755
Cow position: chr23:9193730-9193565 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 157, 68

Conread position: 591-755
Cow position: chr23:3167214-3167383 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 91, 0

Conread position: 599-725
Cow position: chr23:1925022-1924896 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 605-756
Cow position: chr23:25670591-25670442 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 140, 22

Show alignments to all cow chromosomes.