Cow genome map

Conread name: Ss1.1-rthg05_k4.5

Conread position: 347-562
Cow position: chr25:1802823-1802602 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 57

Conread position: 347-580
Cow position: chr25:26136606-26136847 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 162
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 22, 59

Conread position: 359-571
Cow position: chr25:22348257-22348477 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 46

Conread position: 359-578
Cow position: chr25:12509821-12510033 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 211, 45

Conread position: 359-580
Cow position: chr25:26679428-26679202 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 45

Conread position: 363-572
Cow position: chr25:14720928-14720729 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 363-580
Cow position: chr25:9989906-9990134 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 41

Conread position: 375-578
Cow position: chr25:26306019-26306226 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 81, 29

Conread position: 375-580
Cow position: chr25:19363876-19364083 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 29

Conread position: 379-572
Cow position: chr25:2624974-2624781 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 80, 25

Conread position: 383-572
Cow position: chr25:23244828-23245017 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 129
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 82, 21

Conread position: 559-756
Cow position: chr25:40322361-40322163 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 579-720
Cow position: chr25:6475504-6475363 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-724
Cow position: chr25:12082396-12082252 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 579-724
Cow position: chr25:23393822-23393968 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 579-725
Cow position: chr25:9958101-9957960 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 121
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 579-743
Cow position: chr25:11665626-11665785 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 579-743
Cow position: chr25:21949748-21949912 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-750
Cow position: chr25:21903400-21903570 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 155, 0

Conread position: 579-754
Cow position: chr25:7223482-7223307 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:11124716-11124891 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:17904590-17904765 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:18330826-18330650 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 159, 0

Conread position: 579-754
Cow position: chr25:19139622-19139447 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:26705932-26705757 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:27076201-27076026 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:31073646-31073471 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:32610470-32610295 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:35372663-35372488 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:35553620-35553792 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 579-754
Cow position: chr25:35571769-35571944 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr25:35589028-35589202 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 132, 0

Conread position: 579-754
Cow position: chr25:36350690-36350863 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 579-754
Cow position: chr25:39386879-39386704 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr25:449840-449669 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 144, 33

Conread position: 579-755
Cow position: chr25:18490016-18490192 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:2515958-2516129 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 134, 0

Conread position: 579-756
Cow position: chr25:6955018-6955195 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:8655240-8655419 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr25:10013111-10012935 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 128, 72

Conread position: 579-756
Cow position: chr25:11896568-11896745 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:11955781-11955958 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:13786924-13787101 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:13960017-13960194 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:14756459-14756284 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 159, 95

Conread position: 579-756
Cow position: chr25:16922839-16922663 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 579-756
Cow position: chr25:17586070-17585895 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr25:18190422-18190249 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 579-756
Cow position: chr25:18886531-18886354 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:19337375-19337198 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:19367745-19367566 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 132, 0

Conread position: 579-756
Cow position: chr25:19923477-19923648 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 118, 0

Conread position: 579-756
Cow position: chr25:20772376-20772207 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 579-756
Cow position: chr25:22151055-22151232 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:23913622-23913797 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 88, 25

Conread position: 579-756
Cow position: chr25:24303315-24303139 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 161, 102

Conread position: 579-756
Cow position: chr25:24655219-24655047 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 579-756
Cow position: chr25:26281975-26282151 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 147, 0

Conread position: 579-756
Cow position: chr25:26353834-26353657 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 108, 114

Conread position: 579-756
Cow position: chr25:26922792-26922965 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 579-756
Cow position: chr25:27019287-27019111 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 92, 72

Conread position: 579-756
Cow position: chr25:27231309-27231486 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:28275716-28275541 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 73

Conread position: 579-756
Cow position: chr25:28862822-28862999 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:29802795-29802618 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:32577712-32577535 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:33838333-33838512 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 99, 107

Conread position: 579-756
Cow position: chr25:34164611-34164435 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 147, 0

Conread position: 579-756
Cow position: chr25:34503272-34503095 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:34509229-34509052 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr25:35567933-35567759 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 579-756
Cow position: chr25:35755293-35755117 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 170, 0

Conread position: 580-756
Cow position: chr25:2594723-2594889 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 74

Conread position: 580-756
Cow position: chr25:3172448-3172273 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 112, 0

Conread position: 580-756
Cow position: chr25:14790159-14790331 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 165, 14

Conread position: 580-756
Cow position: chr25:23361441-23361613 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 71

Conread position: 580-756
Cow position: chr25:40389782-40389607 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 119, 125

Conread position: 581-754
Cow position: chr25:29525915-29525742 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 581-756
Cow position: chr25:9395367-9395536 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 143
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 23, 0

Conread position: 581-756
Cow position: chr25:11043573-11043746 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 581-756
Cow position: chr25:12939255-12939080 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 96

Conread position: 581-756
Cow position: chr25:20633713-20633887 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 165, 0

Conread position: 581-756
Cow position: chr25:29313367-29313193 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 58, 72

Conread position: 581-756
Cow position: chr25:30340408-30340231 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 110, 21

Conread position: 584-756
Cow position: chr25:29358057-29357885 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 591-756
Cow position: chr25:20075442-20075603 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 144, 112

Conread position: 614-756
Cow position: chr25:4522826-4522684 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.