Cow genome map
| Conread name: | Ss1.1-rthg05_k4.5 |
| Conread position: | 332-580 |
| Cow position: | chr26:33242143-33241884 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 337-572 |
| Cow position: | chr26:8307287-8307524 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 347-572 |
| Cow position: | chr26:20291463-20291688 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 350-580 |
| Cow position: | chr26:1328639-1328861 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 220, 13 |
| Conread position: | 354-572 |
| Cow position: | chr26:34610963-34611177 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 354-580 |
| Cow position: | chr26:23925066-23924845 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 357-580 |
| Cow position: | chr26:7314849-7314617 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 357-580 |
| Cow position: | chr26:19591699-19591478 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 99, 48 |
| Conread position: | 371-572 |
| Cow position: | chr26:28423492-28423291 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 33 |
| Conread position: | 543-755 |
| Cow position: | chr26:8873016-8873228 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 552-756 |
| Cow position: | chr26:17287989-17288193 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 576-733 |
| Cow position: | chr26:10490447-10490603 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 576-756 |
| Cow position: | chr26:9835671-9835854 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 578-756 |
| Cow position: | chr26:17327367-17327545 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 115 |
| Conread position: | 578-756 |
| Cow position: | chr26:24238911-24239078 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 579-731 |
| Cow position: | chr26:12668651-12668804 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 579-733 |
| Cow position: | chr26:10699290-10699142 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 579-736 |
| Cow position: | chr26:2348965-2348808 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-737 |
| Cow position: | chr26:2244300-2244142 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 84 |
| Conread position: | 579-743 |
| Cow position: | chr26:2740404-2740240 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 579-743 |
| Cow position: | chr26:3700177-3700337 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 579-743 |
| Cow position: | chr26:4729118-4728954 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 108, 113 |
| Conread position: | 579-753 |
| Cow position: | chr26:3862872-3862698 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-753 |
| Cow position: | chr26:10011328-10011501 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 160, 125 |
| Conread position: | 579-753 |
| Cow position: | chr26:15145700-15145874 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:1088390-1088565 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 579-754 |
| Cow position: | chr26:1343089-1342914 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:1346788-1346613 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:1637551-1637379 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 579-754 |
| Cow position: | chr26:3157321-3157496 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:3537328-3537503 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:3564833-3564658 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:3833240-3833415 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 107, 112 |
| Conread position: | 579-754 |
| Cow position: | chr26:7559410-7559235 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 108, 113 |
| Conread position: | 579-754 |
| Cow position: | chr26:8885050-8885224 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 67 |
| Conread position: | 579-754 |
| Cow position: | chr26:9069767-9069943 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 105 |
| Conread position: | 579-754 |
| Cow position: | chr26:18804164-18803988 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:18857326-18857501 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:18928488-18928656 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:28706852-28706681 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:30594423-30594248 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:34265170-34265345 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr26:35560855-35560680 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-755 |
| Cow position: | chr26:17429269-17429093 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:386886-387063 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:1390188-1390365 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:2201736-2201911 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:5679736-5679913 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:6844014-6843837 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 579-756 |
| Cow position: | chr26:8084032-8084209 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:8739211-8739034 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:9115245-9115422 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:9694590-9694413 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:12585332-12585155 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:13806821-13806644 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:14488049-14487878 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 125, 41 |
| Conread position: | 579-756 |
| Cow position: | chr26:19795259-19795436 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:21012326-21012502 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:22691596-22691773 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:23590901-23591078 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:23889618-23889795 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:26286065-26286242 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 579-756 |
| Cow position: | chr26:27987384-27987205 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:30625406-30625230 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:31138740-31138567 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:35122036-35121859 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr26:35191341-35191165 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 579-756 |
| Cow position: | chr26:35423705-35423880 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 580-756 |
| Cow position: | chr26:8308555-8308382 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 580-756 |
| Cow position: | chr26:15199235-15199410 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 580-756 |
| Cow position: | chr26:20255836-20256008 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 119, 67 |
| Conread position: | 581-754 |
| Cow position: | chr26:3199579-3199752 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-754 |
| Cow position: | chr26:13183518-13183691 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-754 |
| Cow position: | chr26:16781383-16781556 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 581-756 |
| Cow position: | chr26:46442-46267 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 582-753 |
| Cow position: | chr26:3230677-3230848 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 588-756 |
| Cow position: | chr26:25393003-25393170 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 150, 23 |
| Conread position: | 591-754 |
| Cow position: | chr26:11369915-11370076 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 599-754 |
| Cow position: | chr26:20019327-20019482 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 599-754 |
| Cow position: | chr26:26611682-26611837 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 608-756 |
| Cow position: | chr26:11269457-11269604 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 610-755 |
| Cow position: | chr26:14173300-14173445 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 611-756 |
| Cow position: | chr26:29433470-29433615 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 57 |
Show alignments to all cow chromosomes.