Cow genome map
| Conread name: | Ss1.1-rthg05_k4.5 |
| Conread position: | 337-580 |
| Cow position: | chr27:23560304-23560053 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 338-566 |
| Cow position: | chr27:21669377-21669154 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 348-578 |
| Cow position: | chr27:30890043-30890266 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 359-572 |
| Cow position: | chr27:7343675-7343459 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 360-579 |
| Cow position: | chr27:16103565-16103784 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 363-580 |
| Cow position: | chr27:15003221-15003000 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 375-578 |
| Cow position: | chr27:7412164-7412369 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 93, 29 |
| Conread position: | 379-571 |
| Cow position: | chr27:6319697-6319887 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 578-723 |
| Cow position: | chr27:24239954-24239809 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-756 |
| Cow position: | chr27:20764907-20765084 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 126 |
| Conread position: | 578-756 |
| Cow position: | chr27:30036029-30036207 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 85 |
| Conread position: | 579-725 |
| Cow position: | chr27:15374975-15375122 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 579-733 |
| Cow position: | chr27:4804949-4805103 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-743 |
| Cow position: | chr27:1520841-1521005 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-743 |
| Cow position: | chr27:4823989-4824148 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 579-743 |
| Cow position: | chr27:17565473-17565309 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 160, 155 |
| Conread position: | 579-754 |
| Cow position: | chr27:2001007-2001181 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:6524117-6523943 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:9970332-9970507 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:10579108-10579283 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:12006309-12006484 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:13308805-13308980 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:14380465-14380640 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:15544176-15544351 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 106 |
| Conread position: | 579-754 |
| Cow position: | chr27:22647471-22647296 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:22797496-22797323 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:29036219-29036046 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 579-754 |
| Cow position: | chr27:30307108-30306933 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-755 |
| Cow position: | chr27:1082001-1081825 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-755 |
| Cow position: | chr27:4331579-4331403 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-755 |
| Cow position: | chr27:8429164-8429342 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 579-755 |
| Cow position: | chr27:21392173-21392348 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:1501686-1501852 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:1536331-1536507 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 101, 72 |
| Conread position: | 579-756 |
| Cow position: | chr27:2331664-2331841 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:3653539-3653362 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:4828661-4828837 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:5983869-5983692 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:8291004-8291179 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:8427018-8427196 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:8592547-8592719 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:12277271-12277447 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:13353467-13353644 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:13901285-13901462 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 107, 112 |
| Conread position: | 579-756 |
| Cow position: | chr27:14669358-14669528 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:15272907-15272732 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:15405789-15405959 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:15634181-15634005 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:16031236-16031059 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:19424216-19424039 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 107, 112 |
| Conread position: | 579-756 |
| Cow position: | chr27:19932405-19932228 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:21451605-21451781 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 73 |
| Conread position: | 579-756 |
| Cow position: | chr27:22329668-22329838 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:26330093-26330270 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:27278872-27279052 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 119 |
| Conread position: | 579-756 |
| Cow position: | chr27:27291550-27291731 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 579-756 |
| Cow position: | chr27:28051623-28051447 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 580-725 |
| Cow position: | chr27:24296107-24295962 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 580-756 |
| Cow position: | chr27:3232372-3232196 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-756 |
| Cow position: | chr27:165756-165581 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-756 |
| Cow position: | chr27:2681686-2681858 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 581-756 |
| Cow position: | chr27:14297370-14297545 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-756 |
| Cow position: | chr27:25784590-25784421 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 581-756 |
| Cow position: | chr27:25884988-25885164 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 153 |
| Conread position: | 581-756 |
| Cow position: | chr27:27045340-27045515 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 157, 169 |
| Conread position: | 581-756 |
| Cow position: | chr27:27556969-27557139 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 584-743 |
| Cow position: | chr27:4818582-4818739 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 590-756 |
| Cow position: | chr27:9990031-9989864 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 590-756 |
| Cow position: | chr27:25971429-25971262 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 139 |
| Conread position: | 599-756 |
| Cow position: | chr27:21350029-21350185 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 599-756 |
| Cow position: | chr27:25112344-25112498 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.