Cow genome map

Conread name: Ss1.1-rthg05_k4.5

Conread position: 331-576
Cow position: chr29:23824974-23825230 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 82

Conread position: 346-580
Cow position: chr29:36531081-36530843 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 22, 59

Conread position: 347-580
Cow position: chr29:19949517-19949285 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 109, 16

Conread position: 352-568
Cow position: chr29:19363915-19363700 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 116, 11

Conread position: 359-578
Cow position: chr29:12680360-12680134 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 9, 46

Conread position: 552-756
Cow position: chr29:34737544-34737338 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 107

Conread position: 579-721
Cow position: chr29:2484086-2484228 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-724
Cow position: chr29:10237489-10237342 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 122
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 138, 0

Conread position: 579-730
Cow position: chr29:15699490-15699641 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-737
Cow position: chr29:24983389-24983231 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-737
Cow position: chr29:27823300-27823458 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-743
Cow position: chr29:1687926-1688090 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-743
Cow position: chr29:2463694-2463530 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:3329770-3329945 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:7847570-7847745 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:11119534-11119359 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:13624196-13624021 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:15072303-15072128 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:15117648-15117475 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 144, 0

Conread position: 579-754
Cow position: chr29:16185601-16185426 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:18010753-18010928 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:21227154-21227328 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 131, 0

Conread position: 579-754
Cow position: chr29:21429682-21429507 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 159, 171

Conread position: 579-754
Cow position: chr29:22746078-22746253 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:24806634-24806808 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 579-754
Cow position: chr29:27976827-27976652 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:32291772-32291947 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:32515506-32515681 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:32556566-32556391 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 101, 92

Conread position: 579-754
Cow position: chr29:34331250-34331075 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 160, 155

Conread position: 579-754
Cow position: chr29:34794685-34794510 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 109, 114

Conread position: 579-754
Cow position: chr29:34850935-34851107 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 146

Conread position: 579-754
Cow position: chr29:35265095-35265270 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:38746226-38746401 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:40156922-40157097 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:40294485-40294660 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-754
Cow position: chr29:42255800-42255625 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr29:2401866-2402042 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr29:5978140-5977965 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 174, 53

Conread position: 579-755
Cow position: chr29:10820537-10820361 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-755
Cow position: chr29:17153423-17153591 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 0

Conread position: 579-755
Cow position: chr29:40116482-40116658 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 144
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:45284-45109 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 579-756
Cow position: chr29:726907-727084 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 159, 172

Conread position: 579-756
Cow position: chr29:1478630-1478806 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 579-756
Cow position: chr29:2838158-2837981 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:4163866-4164043 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 107, 112

Conread position: 579-756
Cow position: chr29:4200556-4200733 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:5240572-5240751 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 106

Conread position: 579-756
Cow position: chr29:6218628-6218454 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 579-756
Cow position: chr29:7427964-7427787 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:7664820-7664644 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 579-756
Cow position: chr29:7812019-7811842 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:10452638-10452461 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:12797760-12797937 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:16036239-16036062 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:16064888-16065065 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 161, 171

Conread position: 579-756
Cow position: chr29:19515166-19514990 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 10

Conread position: 579-756
Cow position: chr29:19620091-19619914 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:19657059-19657236 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:20254344-20254519 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 579-756
Cow position: chr29:21474327-21474504 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:22279552-22279727 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 579-756
Cow position: chr29:24577830-24578008 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 153
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 579-756
Cow position: chr29:26262800-26262978 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 141, 0

Conread position: 579-756
Cow position: chr29:27259707-27259529 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 579-756
Cow position: chr29:27702255-27702432 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:28657190-28657013 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 114, 104

Conread position: 579-756
Cow position: chr29:28697201-28697024 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:31184554-31184731 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:32352775-32352950 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 0

Conread position: 579-756
Cow position: chr29:32962493-32962665 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 102, 0

Conread position: 579-756
Cow position: chr29:35002496-35002319 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 103

Conread position: 579-756
Cow position: chr29:35273861-35273684 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:35956124-35955951 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 92

Conread position: 579-756
Cow position: chr29:38229185-38229362 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:38409373-38409552 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 579-756
Cow position: chr29:39076541-39076364 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 579-756
Cow position: chr29:40498698-40498521 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 580-743
Cow position: chr29:7701205-7701048 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 28, 0

Conread position: 580-754
Cow position: chr29:16096991-16097165 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 581-736
Cow position: chr29:10651935-10652090 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 94, 29

Conread position: 581-753
Cow position: chr29:15966374-15966202 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 581-755
Cow position: chr29:16012991-16012823 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 581-756
Cow position: chr29:14208387-14208212 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 581-756
Cow position: chr29:23979891-23980065 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 581-756
Cow position: chr29:31765220-31765395 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 581-756
Cow position: chr29:36208876-36209048 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 126, 0

Conread position: 582-743
Cow position: chr29:13585396-13585557 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 582-756
Cow position: chr29:16101937-16101763 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 119
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 583-756
Cow position: chr29:29589814-29589640 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 125, 168

Conread position: 590-756
Cow position: chr29:24951659-24951825 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 591-755
Cow position: chr29:4864504-4864673 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 596-743
Cow position: chr29:7289744-7289892 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 0

Conread position: 598-756
Cow position: chr29:960398-960556 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 598-756
Cow position: chr29:5785691-5785849 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 598-756
Cow position: chr29:5787295-5787137 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 601-756
Cow position: chr29:20999415-20999570 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 53

Conread position: 606-754
Cow position: chr29:10032449-10032301 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 106
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 629-754
Cow position: chr29:4875903-4875782 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 105, 0

Show alignments to all cow chromosomes.