Cow genome map
| Conread name: | Ss1.1-rthg11_n10.5 |
| Conread position: | 2-794 |
| Cow position: | chrX:24073223-24072437 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 651 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 250 |
| Conread position: | 71-422 |
| Cow position: | chrX:16765882-16765532 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 44, 244 |
| Conread position: | 81-356 |
| Cow position: | chrX:36101810-36101542 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 34 |
| Conread position: | 82-367 |
| Cow position: | chrX:31770551-31770271 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 88-287 |
| Cow position: | chrX:35645998-35646203 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 97-399 |
| Cow position: | chrX:15756964-15757274 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 104-263 |
| Cow position: | chrX:46071219-46071377 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 104-278 |
| Cow position: | chrX:11329892-11330069 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 104-299 |
| Cow position: | chrX:34051082-34050888 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 104-335 |
| Cow position: | chrX:25975001-25974774 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 104-335 |
| Cow position: | chrX:42521974-42521746 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 108-303 |
| Cow position: | chrX:6083707-6083511 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 74, 7 |
| Conread position: | 114-227 |
| Cow position: | chrX:24592032-24592146 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 114-349 |
| Cow position: | chrX:27718240-27718478 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 72, 176 |
| Conread position: | 114-356 |
| Cow position: | chrX:36102014-36102261 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 114-402 |
| Cow position: | chrX:13184328-13184622 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 190, 87 |
| Conread position: | 114-430 |
| Cow position: | chrX:8468452-8468760 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 115-333 |
| Cow position: | chrX:4606694-4606919 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 115-350 |
| Cow position: | chrX:38414227-38413981 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 115-356 |
| Cow position: | chrX:23897425-23897187 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 120-333 |
| Cow position: | chrX:30906176-30905959 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 120-345 |
| Cow position: | chrX:19913564-19913337 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 120-417 |
| Cow position: | chrX:7996514-7996209 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 106, 68 |
| Conread position: | 120-430 |
| Cow position: | chrX:30732695-30732383 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 38, 152 |
| Conread position: | 123-356 |
| Cow position: | chrX:6443782-6444009 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 124-278 |
| Cow position: | chrX:38010129-38009975 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 124-299 |
| Cow position: | chrX:30839123-30838947 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 6, 161 |
| Conread position: | 124-314 |
| Cow position: | chrX:11188911-11189103 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 163 |
| Conread position: | 124-349 |
| Cow position: | chrX:17849373-17849597 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 150 |
| Conread position: | 124-434 |
| Cow position: | chrX:1120733-1121048 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 31 |
| Conread position: | 124-442 |
| Cow position: | chrX:4280341-4280675 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 25, 137 |
| Conread position: | 124-447 |
| Cow position: | chrX:33779709-33779367 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 185 |
| Conread position: | 125-425 |
| Cow position: | chrX:10989789-10990100 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 61, 48 |
| Conread position: | 125-430 |
| Cow position: | chrX:28818317-28818618 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 127-350 |
| Cow position: | chrX:29524506-29524729 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 159 |
| Conread position: | 127-430 |
| Cow position: | chrX:34795205-34795520 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 132-442 |
| Cow position: | chrX:46427535-46427858 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 787-1101 |
| Cow position: | chrX:24071178-24070858 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 117 |
Show alignments to all cow chromosomes.