Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-159
Cow position:
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 1-206
Cow position:
Alignm length: 208
Alignm identity: 149
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 54

Conread position: 1-225
Cow position:
Alignm length: 227
Alignm identity: 167
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 84

Conread position: 1-236
Cow position:
Alignm length: 237
Alignm identity: 171
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 80

Conread position: 1-238
Cow position:
Alignm length: 243
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 19, 7

Conread position: 1-245
Cow position:
Alignm length: 246
Alignm identity: 186
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 18, 112

Conread position: 1-246
Cow position:
Alignm length: 257
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 59

Conread position: 1-267
Cow position:
Alignm length: 269
Alignm identity: 189
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 18, 24

Conread position: 1-271
Cow position:
Alignm length: 271
Alignm identity: 191
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 1-271
Cow position:
Alignm length: 278
Alignm identity: 186
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 85

Conread position: 1-294
Cow position:
Alignm length: 308
Alignm identity: 224
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 52

Conread position: 1-294
Cow position:
Alignm length: 302
Alignm identity: 214
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 18, 24

Conread position: 1-295
Cow position:
Alignm length: 298
Alignm identity: 209
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 18, 0

Conread position: 1-295
Cow position:
Alignm length: 306
Alignm identity: 219
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 18, 89

Conread position: 1-594
Cow position:
Alignm length: 638
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 235

Conread position: 1-839
Cow position:
Alignm length: 883
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 26

Conread position: 1-848
Cow position:
Alignm length: 907
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 385

Conread position: 1-850
Cow position:
Alignm length: 912
Alignm identity: 617
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 46

Conread position: 2-147
Cow position:
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 125

Conread position: 2-216
Cow position:
Alignm length: 219
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 112, 20

Conread position: 2-285
Cow position:
Alignm length: 285
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 31

Conread position: 2-353
Cow position:
Alignm length: 364
Alignm identity: 247
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 17, 47

Conread position: 2-367
Cow position:
Alignm length: 380
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 139

Conread position: 3-222
Cow position:
Alignm length: 222
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 17, 108

Conread position: 3-260
Cow position:
Alignm length: 259
Alignm identity: 171
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 18, 37

Conread position: 3-267
Cow position:
Alignm length: 268
Alignm identity: 185
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 16, 67

Conread position: 3-267
Cow position:
Alignm length: 266
Alignm identity: 183
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 16, 45

Conread position: 3-267
Cow position:
Alignm length: 271
Alignm identity: 187
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 242

Conread position: 3-267
Cow position:
Alignm length: 268
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 16, 0

Conread position: 3-294
Cow position:
Alignm length: 297
Alignm identity: 203
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 3-295
Cow position:
Alignm length: 295
Alignm identity: 193
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 16, 203

Conread position: 5-267
Cow position:
Alignm length: 267
Alignm identity: 182
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 0

Conread position: 5-285
Cow position:
Alignm length: 283
Alignm identity: 201
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 14, 183

Conread position: 5-295
Cow position:
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position:
Alignm length: 292
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-393
Cow position:
Alignm length: 397
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 7-285
Cow position:
Alignm length: 280
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 7-289
Cow position:
Alignm length: 290
Alignm identity: 200
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 13, 47

Conread position: 10-285
Cow position:
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 96

Conread position: 10-294
Cow position:
Alignm length: 290
Alignm identity: 195
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 9, 38

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 203
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 9, 60

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 296
Alignm identity: 195
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 207
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 9, 156

Conread position: 10-295
Cow position:
Alignm length: 289
Alignm identity: 199
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 8, 257

Conread position: 10-295
Cow position:
Alignm length: 289
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 9, 179

Conread position: 12-212
Cow position:
Alignm length: 202
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 197, 97

Conread position: 14-267
Cow position:
Alignm length: 264
Alignm identity: 179
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 5, 165

Conread position: 17-208
Cow position:
Alignm length: 192
Alignm identity: 131
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 17-211
Cow position:
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 17, 47

Conread position: 17-212
Cow position:
Alignm length: 196
Alignm identity: 135
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 17-285
Cow position:
Alignm length: 273
Alignm identity: 180
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 192, 32

Conread position: 18-153
Cow position:
Alignm length: 137
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 18-267
Cow position:
Alignm length: 250
Alignm identity: 175
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 190
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 182
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 279
Alignm identity: 178
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 18-301
Cow position:
Alignm length: 285
Alignm identity: 186
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 278, 0

Conread position: 20-298
Cow position:
Alignm length: 290
Alignm identity: 203
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 190, 13

Conread position: 21-221
Cow position:
Alignm length: 207
Alignm identity: 155
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 89, 0

Conread position: 22-209
Cow position:
Alignm length: 191
Alignm identity: 145
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 20, 69

Conread position: 26-286
Cow position:
Alignm length: 262
Alignm identity: 181
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 28, 13

Conread position: 26-294
Cow position:
Alignm length: 271
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 123, 162

Conread position: 26-294
Cow position:
Alignm length: 271
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 123, 162

Conread position: 33-309
Cow position:
Alignm length: 282
Alignm identity: 192
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 87, 13

Conread position: 34-253
Cow position:
Alignm length: 220
Alignm identity: 157
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 5, 0

Conread position: 34-295
Cow position:
Alignm length: 262
Alignm identity: 181
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 41-267
Cow position:
Alignm length: 230
Alignm identity: 162
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 42, 30

Conread position: 41-267
Cow position:
Alignm length: 228
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 76

Conread position: 41-269
Cow position:
Alignm length: 230
Alignm identity: 172
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 13, 0

Conread position: 41-285
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 69, 0

Conread position: 41-285
Cow position:
Alignm length: 245
Alignm identity: 181
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 230, 0

Conread position: 41-295
Cow position:
Alignm length: 255
Alignm identity: 171
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 8, 0

Conread position: 42-285
Cow position:
Alignm length: 244
Alignm identity: 178
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 144, 0

Conread position: 43-295
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 47-269
Cow position:
Alignm length: 223
Alignm identity: 164
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 147, 0

Conread position: 56-685
Cow position:
Alignm length: 650
Alignm identity: 392
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 115

Conread position: 61-260
Cow position:
Alignm length: 203
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 156, 128

Conread position: 64-293
Cow position:
Alignm length: 233
Alignm identity: 163
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 220, 46

Conread position: 65-285
Cow position:
Alignm length: 221
Alignm identity: 157
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 66-267
Cow position:
Alignm length: 202
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 66-295
Cow position:
Alignm length: 233
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 69-267
Cow position:
Alignm length: 201
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 77-267
Cow position:
Alignm length: 191
Alignm identity: 139
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 77-295
Cow position:
Alignm length: 220
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 70

Conread position: 80-866
Cow position:
Alignm length: 799
Alignm identity: 246
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 522, 537

Conread position: 92-283
Cow position:
Alignm length: 192
Alignm identity: 144
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 93-293
Cow position:
Alignm length: 201
Alignm identity: 147
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 143-295
Cow position:
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 95, 72

Conread position: 293-730
Cow position:
Alignm length: 481
Alignm identity: 308
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 277

Conread position: 293-730
Cow position:
Alignm length: 482
Alignm identity: 315
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 272

Conread position: 293-742
Cow position:
Alignm length: 494
Alignm identity: 322
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 278

Conread position: 293-742
Cow position:
Alignm length: 490
Alignm identity: 328
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 59, 47

Conread position: 293-742
Cow position:
Alignm length: 489
Alignm identity: 318
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 59, 47

Conread position: 293-861
Cow position:
Alignm length: 613
Alignm identity: 398
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 61, 275

Conread position: 297-859
Cow position:
Alignm length: 588
Alignm identity: 369
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 61, 49

Conread position: 328-852
Cow position:
Alignm length: 548
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 219

Conread position: 363-896
Cow position:
Alignm length: 563
Alignm identity: 371
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 52, 160

Conread position: 372-685
Cow position:
Alignm length: 342
Alignm identity: 225
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 177

Conread position: 372-860
Cow position:
Alignm length: 524
Alignm identity: 348
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 50, 38

Conread position: 376-742
Cow position:
Alignm length: 393
Alignm identity: 261
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 46, 34

Conread position: 404-685
Cow position:
Alignm length: 304
Alignm identity: 202
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 145

Conread position: 442-855
Cow position:
Alignm length: 431
Alignm identity: 269
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 41, 100

Conread position: 442-861
Cow position:
Alignm length: 435
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 41

Conread position: 442-871
Cow position:
Alignm length: 451
Alignm identity: 304
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 35, 57

Conread position: 444-730
Cow position:
Alignm length: 302
Alignm identity: 198
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 105

Conread position: 444-742
Cow position:
Alignm length: 313
Alignm identity: 209
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 93

Conread position: 444-742
Cow position:
Alignm length: 317
Alignm identity: 211
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 7, 106

Conread position: 444-742
Cow position:
Alignm length: 314
Alignm identity: 212
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 7, 92

Conread position: 444-754
Cow position:
Alignm length: 325
Alignm identity: 226
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 40, 97

Conread position: 444-755
Cow position:
Alignm length: 325
Alignm identity: 216
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 39, 97

Conread position: 446-754
Cow position:
Alignm length: 324
Alignm identity: 220
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 39, 87

Conread position: 448-792
Cow position:
Alignm length: 357
Alignm identity: 236
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 87

Conread position: 452-776
Cow position:
Alignm length: 337
Alignm identity: 231
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 104, 76

Conread position: 453-742
Cow position:
Alignm length: 307
Alignm identity: 206
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 82

Conread position: 456-870
Cow position:
Alignm length: 448
Alignm identity: 308
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 7, 85

Conread position: 458-869
Cow position:
Alignm length: 426
Alignm identity: 284
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 29, 82

Conread position: 466-742
Cow position:
Alignm length: 287
Alignm identity: 195
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 99, 64

Conread position: 507-866
Cow position:
Alignm length: 377
Alignm identity: 252
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 54, 30

Conread position: 555-866
Cow position:
Alignm length: 314
Alignm identity: 205
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 266, 46

Conread position: 583-852
Cow position:
Alignm length: 273
Alignm identity: 188
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 44, 65

Conread position: 599-797
Cow position:
Alignm length: 208
Alignm identity: 156
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 18, 102

Conread position: 603-856
Cow position:
Alignm length: 260
Alignm identity: 190
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 32, 93

Conread position: 645-862
Cow position:
Alignm length: 224
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 9

Conread position: 648-881
Cow position:
Alignm length: 238
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 89, 68

Show alignments to all cow chromosomes.