Cow genome map
| Conread name: | Ss1.1-rthg14_d21.5 |
| Conread position: | 1-216 |
| Cow position: | chr12:28004990-28004786 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 1-220 |
| Cow position: | chr12:349427-349209 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 199 |
| Conread position: | 1-696 |
| Cow position: | chr12:17979795-17979062 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 2-151 |
| Cow position: | chr12:23161864-23162013 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 2-179 |
| Cow position: | chr12:48211456-48211633 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 3-253 |
| Cow position: | chr12:35313614-35313860 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 3-295 |
| Cow position: | chr12:43030317-43030616 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 112 |
| Conread position: | 5-253 |
| Cow position: | chr12:12293030-12292783 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 134, 33 |
| Conread position: | 5-285 |
| Cow position: | chr12:21199023-21198743 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 219 |
| Conread position: | 5-294 |
| Cow position: | chr12:27854903-27855193 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-295 |
| Cow position: | chr12:600299-600585 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 5-295 |
| Cow position: | chr12:6405581-6405872 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 7-285 |
| Cow position: | chr12:8677037-8677318 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 12, 105 |
| Conread position: | 10-285 |
| Cow position: | chr12:1403550-1403274 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-295 |
| Cow position: | chr12:21209703-21209424 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 10-295 |
| Cow position: | chr12:22204686-22204972 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-295 |
| Cow position: | chr12:42858481-42858765 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 14-291 |
| Cow position: | chr12:5551863-5552137 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 17-221 |
| Cow position: | chr12:35345603-35345407 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 18-266 |
| Cow position: | chr12:21428913-21428659 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 192 |
| Conread position: | 18-285 |
| Cow position: | chr12:25262418-25262686 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 18-295 |
| Cow position: | chr12:27931857-27932134 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 15, 192 |
| Conread position: | 18-295 |
| Cow position: | chr12:41380728-41380451 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-200 |
| Cow position: | chr12:32064146-32063971 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 22-295 |
| Cow position: | chr12:25554334-25554605 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 24-281 |
| Cow position: | chr12:11580783-11580534 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 28-294 |
| Cow position: | chr12:467313-467567 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 33-222 |
| Cow position: | chr12:1777265-1777459 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 41-295 |
| Cow position: | chr12:11099261-11099008 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 12, 227 |
| Conread position: | 41-757 |
| Cow position: | chr12:32654564-32653789 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 8 |
| Conread position: | 42-325 |
| Cow position: | chr12:21387220-21387501 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 43-295 |
| Cow position: | chr12:14661602-14661858 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 44-295 |
| Cow position: | chr12:36367847-36367606 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 56-230 |
| Cow position: | chr12:39412975-39412803 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 89-742 |
| Cow position: | chr12:21253735-21254397 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 252 |
| Conread position: | 95-285 |
| Cow position: | chr12:28765047-28765237 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 115-513 |
| Cow position: | chr12:24557157-24557596 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 140 |
| Conread position: | 293-775 |
| Cow position: | chr12:8197966-8197444 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 312 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 58, 272 |
| Conread position: | 377-730 |
| Cow position: | chr12:4158027-4157648 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 172 |
| Conread position: | 442-823 |
| Cow position: | chr12:3631292-3631683 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 444-742 |
| Cow position: | chr12:37559120-37558815 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 455-855 |
| Cow position: | chr12:21427250-21426844 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 461-755 |
| Cow position: | chr12:14662073-14662379 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 512-876 |
| Cow position: | chr12:21500956-21500593 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 25 |
Show alignments to all cow chromosomes.