Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-225
Cow position: chr13:43982251-43982475 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 18, 200

Conread position: 1-232
Cow position: chr13:34153915-34154146 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 18, 47

Conread position: 1-261
Cow position: chr13:30654533-30654795 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 1-266
Cow position: chr13:34049588-34049319 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 209

Conread position: 1-272
Cow position: chr13:17330915-17331187 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 18, 157

Conread position: 1-285
Cow position: chr13:28670418-28670700 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 1-294
Cow position: chr13:14177992-14178285 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 18, 48

Conread position: 1-294
Cow position: chr13:16254537-16254831 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 48

Conread position: 1-294
Cow position: chr13:20541206-20541491 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 21

Conread position: 1-295
Cow position: chr13:34765610-34765897 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 56

Conread position: 1-295
Cow position: chr13:60699813-60700116 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 18, 0

Conread position: 1-298
Cow position: chr13:31555897-31556184 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 61, 18

Conread position: 1-381
Cow position: chr13:25692528-25692138 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 47

Conread position: 1-862
Cow position: chr13:34938309-34937414 (view UCSC Genome Browser custom track)
Alignm length: 914
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 39

Conread position: 2-295
Cow position: chr13:57024544-57024249 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 121

Conread position: 3-196
Cow position: chr13:25952938-25952747 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 16, 107

Conread position: 3-267
Cow position: chr13:42218068-42218345 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 69

Conread position: 3-267
Cow position: chr13:50110296-50110031 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 16, 115

Conread position: 3-295
Cow position: chr13:60467171-60466880 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 19, 234

Conread position: 5-175
Cow position: chr13:14402255-14402426 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 5-285
Cow position: chr13:4942226-4941952 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 43

Conread position: 5-294
Cow position: chr13:15519664-15519954 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position: chr13:1592312-1592600 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 19, 106

Conread position: 5-295
Cow position: chr13:9045612-9045329 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 183

Conread position: 5-352
Cow position: chr13:15543383-15543036 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 196

Conread position: 7-267
Cow position: chr13:21839361-21839620 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 33

Conread position: 7-755
Cow position: chr13:6667292-6668087 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 167

Conread position: 10-173
Cow position: chr13:43590169-43590005 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 10-285
Cow position: chr13:31611470-31611745 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 38

Conread position: 10-294
Cow position: chr13:15923542-15923827 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr13:3653482-3653768 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr13:32736986-32737272 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr13:47229164-47229453 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 9, 0

Conread position: 17-200
Cow position: chr13:27898268-27898450 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 60

Conread position: 17-253
Cow position: chr13:12633388-12633162 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 23

Conread position: 17-285
Cow position: chr13:5627987-5628246 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 36, 30

Conread position: 17-294
Cow position: chr13:30278445-30278172 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 17-295
Cow position: chr13:46102160-46101890 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 185
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 18, 35

Conread position: 18-264
Cow position: chr13:21697080-21696834 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 34

Conread position: 18-267
Cow position: chr13:11797891-11798131 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 18-285
Cow position: chr13:4484624-4484359 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 24, 152

Conread position: 18-285
Cow position: chr13:49974505-49974238 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 179
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr13:3056307-3056584 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr13:13900696-13900421 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 18-295
Cow position: chr13:17309301-17309024 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 188
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr13:34030239-34029962 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 92

Conread position: 18-295
Cow position: chr13:34041508-34041782 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 18-295
Cow position: chr13:34324727-34325008 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 181

Conread position: 18-295
Cow position: chr13:34424590-34424313 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr13:52646047-52646324 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 55, 60

Conread position: 18-862
Cow position: chr13:26844843-26844033 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 21

Conread position: 21-680
Cow position: chr13:15450304-15451005 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 460
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 8, 75

Conread position: 26-220
Cow position: chr13:35031944-35031750 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 133
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 14, 22

Conread position: 33-262
Cow position: chr13:5625191-5625421 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 14

Conread position: 33-277
Cow position: chr13:6758782-6758540 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 127, 0

Conread position: 33-295
Cow position: chr13:32546194-32545932 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 33-297
Cow position: chr13:47568025-47567767 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 17

Conread position: 41-262
Cow position: chr13:11315717-11315503 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 44

Conread position: 41-267
Cow position: chr13:35758079-35757852 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 13, 0

Conread position: 41-294
Cow position: chr13:32984546-32984802 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 81, 8

Conread position: 41-295
Cow position: chr13:2388009-2388263 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 41-295
Cow position: chr13:30304089-30303835 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 43-285
Cow position: chr13:19441368-19441130 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 179, 67

Conread position: 43-295
Cow position: chr13:58118107-58118358 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 6, 0

Conread position: 44-285
Cow position: chr13:33335511-33335749 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 25, 194

Conread position: 48-294
Cow position: chr13:30239035-30238791 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 61-295
Cow position: chr13:34910083-34910314 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 59, 0

Conread position: 69-267
Cow position: chr13:30243902-30244101 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 60

Conread position: 75-295
Cow position: chr13:23002526-23002755 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 128, 102

Conread position: 89-299
Cow position: chr13:19414222-19414023 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 198, 21

Conread position: 94-295
Cow position: chr13:31730122-31730323 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 143-425
Cow position: chr13:48358411-48358130 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 195
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 165, 172

Conread position: 293-727
Cow position: chr13:34325029-34325505 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 319
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 47

Conread position: 293-729
Cow position: chr13:32984820-32985295 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 312
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 47, 269

Conread position: 293-742
Cow position: chr13:49974207-49973722 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 320
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 66, 47

Conread position: 293-752
Cow position: chr13:30238773-30238280 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 327
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 91, 271

Conread position: 293-757
Cow position: chr13:30244150-30244654 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 332
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 59, 47

Conread position: 371-752
Cow position: chr13:30656546-30656943 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 262
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 51

Conread position: 372-742
Cow position: chr13:47229567-47229963 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 260
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 183

Conread position: 372-748
Cow position: chr13:34869181-34868782 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 177

Conread position: 372-857
Cow position: chr13:34049062-34048554 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 347
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 16

Conread position: 372-869
Cow position: chr13:31556290-31556804 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 177

Conread position: 400-870
Cow position: chr13:19413614-19413146 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 329
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 27

Conread position: 438-820
Cow position: chr13:21132302-21131903 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 10

Conread position: 438-856
Cow position: chr13:22184882-22185299 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 298
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 39, 10

Conread position: 442-736
Cow position: chr13:9044855-9044552 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 41, 12

Conread position: 444-722
Cow position: chr13:50109809-50109519 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 105

Conread position: 444-736
Cow position: chr13:31733736-31734041 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 7, 99

Conread position: 444-742
Cow position: chr13:3057761-3058072 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position: chr13:13325098-13324787 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 209
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position: chr13:17308819-17308513 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 7, 92

Conread position: 444-754
Cow position: chr13:33336073-33336385 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 39, 89

Conread position: 446-677
Cow position: chr13:31611955-31612200 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 446-754
Cow position: chr13:15924031-15924350 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 37, 95

Conread position: 446-754
Cow position: chr13:30303631-30303310 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 31, 98

Conread position: 446-856
Cow position: chr13:27921884-27922298 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 279
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 36, 12

Conread position: 476-871
Cow position: chr13:29202040-29202451 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 53

Conread position: 508-800
Cow position: chr13:11063894-11064179 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 89, 28

Conread position: 600-869
Cow position: chr13:48357750-48357485 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 35, 12

Conread position: 633-803
Cow position: chr13:30262509-30262340 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 159, 57

Conread position: 633-891
Cow position: chr13:34766720-34766972 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 103, 60

Show alignments to all cow chromosomes.