Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-203
Cow position:
Alignm length: 204
Alignm identity: 158
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 33, 47

Conread position: 1-219
Cow position:
Alignm length: 222
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 39

Conread position: 1-222
Cow position:
Alignm length: 224
Alignm identity: 165
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 84

Conread position: 1-237
Cow position:
Alignm length: 243
Alignm identity: 163
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 49

Conread position: 1-277
Cow position:
Alignm length: 279
Alignm identity: 186
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 18, 48

Conread position: 1-280
Cow position:
Alignm length: 284
Alignm identity: 201
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 20, 90

Conread position: 1-282
Cow position:
Alignm length: 284
Alignm identity: 203
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 18, 172

Conread position: 1-285
Cow position:
Alignm length: 289
Alignm identity: 198
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 1-285
Cow position:
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 18, 178

Conread position: 1-294
Cow position:
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-294
Cow position:
Alignm length: 298
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 210

Conread position: 1-294
Cow position:
Alignm length: 298
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 283, 14

Conread position: 1-295
Cow position:
Alignm length: 297
Alignm identity: 203
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 16, 128

Conread position: 1-295
Cow position:
Alignm length: 295
Alignm identity: 204
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 14, 0

Conread position: 1-295
Cow position:
Alignm length: 298
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 41

Conread position: 1-295
Cow position:
Alignm length: 295
Alignm identity: 203
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 205, 0

Conread position: 1-296
Cow position:
Alignm length: 299
Alignm identity: 207
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 126

Conread position: 1-359
Cow position:
Alignm length: 368
Alignm identity: 246
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 273, 14

Conread position: 1-861
Cow position:
Alignm length: 919
Alignm identity: 648
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 31

Conread position: 2-285
Cow position:
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 28

Conread position: 2-293
Cow position:
Alignm length: 296
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 244

Conread position: 2-294
Cow position:
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 2-295
Cow position:
Alignm length: 296
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 189

Conread position: 2-300
Cow position:
Alignm length: 307
Alignm identity: 222
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 40, 36

Conread position: 2-375
Cow position:
Alignm length: 378
Alignm identity: 249
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 17, 88

Conread position: 3-267
Cow position:
Alignm length: 270
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 189

Conread position: 3-267
Cow position:
Alignm length: 266
Alignm identity: 180
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 45

Conread position: 3-267
Cow position:
Alignm length: 268
Alignm identity: 177
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 16, 116

Conread position: 3-295
Cow position:
Alignm length: 298
Alignm identity: 203
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 15, 67

Conread position: 3-295
Cow position:
Alignm length: 297
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 116

Conread position: 3-295
Cow position:
Alignm length: 295
Alignm identity: 198
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 16, 202

Conread position: 3-298
Cow position:
Alignm length: 298
Alignm identity: 192
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 17, 109

Conread position: 4-295
Cow position:
Alignm length: 294
Alignm identity: 197
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 187

Conread position: 5-291
Cow position:
Alignm length: 298
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position:
Alignm length: 292
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position:
Alignm length: 298
Alignm identity: 212
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 15, 238

Conread position: 5-295
Cow position:
Alignm length: 292
Alignm identity: 207
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 14, 126

Conread position: 5-295
Cow position:
Alignm length: 295
Alignm identity: 197
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 15, 169

Conread position: 6-294
Cow position:
Alignm length: 296
Alignm identity: 210
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 13, 33

Conread position: 6-296
Cow position:
Alignm length: 297
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 13, 184

Conread position: 7-294
Cow position:
Alignm length: 300
Alignm identity: 207
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 12, 223

Conread position: 7-295
Cow position:
Alignm length: 290
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 41

Conread position: 7-295
Cow position:
Alignm length: 294
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 9-473
Cow position:
Alignm length: 482
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 71

Conread position: 10-264
Cow position:
Alignm length: 259
Alignm identity: 193
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 9, 21

Conread position: 10-267
Cow position:
Alignm length: 260
Alignm identity: 181
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 8, 0

Conread position: 10-285
Cow position:
Alignm length: 277
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-285
Cow position:
Alignm length: 277
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 38

Conread position: 10-285
Cow position:
Alignm length: 278
Alignm identity: 190
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 9, 111

Conread position: 10-285
Cow position:
Alignm length: 279
Alignm identity: 192
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 9, 196

Conread position: 10-285
Cow position:
Alignm length: 277
Alignm identity: 195
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 38

Conread position: 10-292
Cow position:
Alignm length: 289
Alignm identity: 197
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 15, 30

Conread position: 10-295
Cow position:
Alignm length: 289
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 228

Conread position: 10-295
Cow position:
Alignm length: 292
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 212

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 74

Conread position: 10-381
Cow position:
Alignm length: 381
Alignm identity: 255
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 9, 42

Conread position: 10-751
Cow position:
Alignm length: 786
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 178

Conread position: 17-228
Cow position:
Alignm length: 214
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 191, 166

Conread position: 17-253
Cow position:
Alignm length: 237
Alignm identity: 170
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 170, 0

Conread position: 18-245
Cow position:
Alignm length: 229
Alignm identity: 166
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 93

Conread position: 18-285
Cow position:
Alignm length: 269
Alignm identity: 186
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 150, 91

Conread position: 18-285
Cow position:
Alignm length: 268
Alignm identity: 185
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 31, 0

Conread position: 18-285
Cow position:
Alignm length: 268
Alignm identity: 185
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 31, 0

Conread position: 18-287
Cow position:
Alignm length: 272
Alignm identity: 188
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 24, 195

Conread position: 18-294
Cow position:
Alignm length: 281
Alignm identity: 189
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 266, 168

Conread position: 18-295
Cow position:
Alignm length: 284
Alignm identity: 194
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 18, 41

Conread position: 18-685
Cow position:
Alignm length: 702
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 21

Conread position: 18-855
Cow position:
Alignm length: 903
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 329

Conread position: 19-295
Cow position:
Alignm length: 282
Alignm identity: 198
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 238

Conread position: 22-295
Cow position:
Alignm length: 275
Alignm identity: 181
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 94, 88

Conread position: 23-222
Cow position:
Alignm length: 200
Alignm identity: 140
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 24-294
Cow position:
Alignm length: 272
Alignm identity: 189
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 169, 129

Conread position: 24-295
Cow position:
Alignm length: 272
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 23, 0

Conread position: 24-832
Cow position:
Alignm length: 842
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 17

Conread position: 27-222
Cow position:
Alignm length: 198
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 90, 74

Conread position: 27-295
Cow position:
Alignm length: 270
Alignm identity: 192
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 83, 176

Conread position: 28-216
Cow position:
Alignm length: 190
Alignm identity: 134
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 30-294
Cow position:
Alignm length: 267
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 242, 58

Conread position: 31-295
Cow position:
Alignm length: 269
Alignm identity: 177
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 23, 69

Conread position: 33-284
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 66, 189

Conread position: 33-394
Cow position:
Alignm length: 367
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 243

Conread position: 33-745
Cow position:
Alignm length: 765
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 6

Conread position: 41-267
Cow position:
Alignm length: 227
Alignm identity: 152
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 41-294
Cow position:
Alignm length: 254
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 41-295
Cow position:
Alignm length: 255
Alignm identity: 181
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 17, 0

Conread position: 41-295
Cow position:
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 70

Conread position: 44-295
Cow position:
Alignm length: 254
Alignm identity: 186
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 10, 169

Conread position: 44-594
Cow position:
Alignm length: 600
Alignm identity: 386
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 229, 35

Conread position: 49-295
Cow position:
Alignm length: 247
Alignm identity: 171
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 128, 0

Conread position: 53-267
Cow position:
Alignm length: 215
Alignm identity: 148
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 56-266
Cow position:
Alignm length: 212
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 0

Conread position: 57-285
Cow position:
Alignm length: 233
Alignm identity: 157
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 22

Conread position: 75-222
Cow position:
Alignm length: 149
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 35

Conread position: 89-263
Cow position:
Alignm length: 175
Alignm identity: 127
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 114-298
Cow position:
Alignm length: 189
Alignm identity: 136
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 173, 78

Conread position: 115-269
Cow position:
Alignm length: 155
Alignm identity: 120
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 92, 0

Conread position: 122-294
Cow position:
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 162, 89

Conread position: 155-285
Cow position:
Alignm length: 131
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 293-730
Cow position:
Alignm length: 481
Alignm identity: 316
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 65, 47

Conread position: 293-743
Cow position:
Alignm length: 488
Alignm identity: 316
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 69, 47

Conread position: 293-748
Cow position:
Alignm length: 490
Alignm identity: 327
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 48, 23

Conread position: 293-869
Cow position:
Alignm length: 614
Alignm identity: 394
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 59, 204

Conread position: 297-692
Cow position:
Alignm length: 419
Alignm identity: 286
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 69, 179

Conread position: 297-742
Cow position:
Alignm length: 490
Alignm identity: 317
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 55, 43

Conread position: 371-742
Cow position:
Alignm length: 397
Alignm identity: 261
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 51, 34

Conread position: 372-754
Cow position:
Alignm length: 407
Alignm identity: 271
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 43, 173

Conread position: 377-755
Cow position:
Alignm length: 408
Alignm identity: 280
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 33, 179

Conread position: 383-866
Cow position:
Alignm length: 499
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 76

Conread position: 389-727
Cow position:
Alignm length: 363
Alignm identity: 243
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 34, 21

Conread position: 391-857
Cow position:
Alignm length: 492
Alignm identity: 330
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 156

Conread position: 404-690
Cow position:
Alignm length: 307
Alignm identity: 208
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 138

Conread position: 442-753
Cow position:
Alignm length: 325
Alignm identity: 209
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 39, 91

Conread position: 443-862
Cow position:
Alignm length: 445
Alignm identity: 296
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 40, 5

Conread position: 443-869
Cow position:
Alignm length: 466
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 91

Conread position: 444-696
Cow position:
Alignm length: 269
Alignm identity: 186
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 39, 91

Conread position: 444-713
Cow position:
Alignm length: 283
Alignm identity: 189
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 32, 90

Conread position: 444-722
Cow position:
Alignm length: 294
Alignm identity: 195
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position:
Alignm length: 315
Alignm identity: 212
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 7, 92

Conread position: 444-757
Cow position:
Alignm length: 329
Alignm identity: 221
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 7, 92

Conread position: 444-840
Cow position:
Alignm length: 415
Alignm identity: 278
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 115, 42

Conread position: 446-754
Cow position:
Alignm length: 320
Alignm identity: 219
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 23, 92

Conread position: 446-754
Cow position:
Alignm length: 323
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 37, 95

Conread position: 446-819
Cow position:
Alignm length: 386
Alignm identity: 252
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 95

Conread position: 446-869
Cow position:
Alignm length: 430
Alignm identity: 282
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 29, 93

Conread position: 449-855
Cow position:
Alignm length: 426
Alignm identity: 286
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 25, 51

Conread position: 450-685
Cow position:
Alignm length: 245
Alignm identity: 162
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 116, 86

Conread position: 450-752
Cow position:
Alignm length: 318
Alignm identity: 214
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 91

Conread position: 456-733
Cow position:
Alignm length: 294
Alignm identity: 204
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 21, 78

Conread position: 461-743
Cow position:
Alignm length: 296
Alignm identity: 199
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 72

Conread position: 461-855
Cow position:
Alignm length: 406
Alignm identity: 253
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 104, 9

Conread position: 468-690
Cow position:
Alignm length: 238
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 74

Conread position: 471-752
Cow position:
Alignm length: 292
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 59

Conread position: 476-850
Cow position:
Alignm length: 390
Alignm identity: 259
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 73, 61

Conread position: 497-874
Cow position:
Alignm length: 397
Alignm identity: 270
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 74, 39

Conread position: 497-885
Cow position:
Alignm length: 403
Alignm identity: 271
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 69, 105

Conread position: 497-885
Cow position:
Alignm length: 407
Alignm identity: 270
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 94, 39

Conread position: 508-861
Cow position:
Alignm length: 375
Alignm identity: 249
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 46, 34

Conread position: 564-798
Cow position:
Alignm length: 246
Alignm identity: 171
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 33, 19

Conread position: 601-871
Cow position:
Alignm length: 279
Alignm identity: 191
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 112

Conread position: 684-874
Cow position:
Alignm length: 196
Alignm identity: 136
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 62, 10

Show alignments to all cow chromosomes.