Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-206
Cow position:
Alignm length: 215
Alignm identity: 165
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 13

Conread position: 1-209
Cow position:
Alignm length: 211
Alignm identity: 155
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 18, 38

Conread position: 1-221
Cow position:
Alignm length: 221
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 1-222
Cow position:
Alignm length: 224
Alignm identity: 169
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 17, 89

Conread position: 1-237
Cow position:
Alignm length: 238
Alignm identity: 167
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 18, 96

Conread position: 1-242
Cow position:
Alignm length: 244
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 74, 100

Conread position: 1-285
Cow position:
Alignm length: 288
Alignm identity: 202
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 90

Conread position: 1-285
Cow position:
Alignm length: 286
Alignm identity: 203
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 188

Conread position: 1-294
Cow position:
Alignm length: 300
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-294
Cow position:
Alignm length: 296
Alignm identity: 205
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 18, 33

Conread position: 1-294
Cow position:
Alignm length: 294
Alignm identity: 198
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 1-295
Cow position:
Alignm length: 299
Alignm identity: 210
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 18, 50

Conread position: 1-295
Cow position:
Alignm length: 301
Alignm identity: 208
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 18, 175

Conread position: 1-295
Cow position:
Alignm length: 297
Alignm identity: 213
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 18, 38

Conread position: 1-298
Cow position:
Alignm length: 303
Alignm identity: 215
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 18, 30

Conread position: 1-363
Cow position:
Alignm length: 365
Alignm identity: 241
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 47

Conread position: 2-234
Cow position:
Alignm length: 234
Alignm identity: 157
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 30, 17

Conread position: 2-251
Cow position:
Alignm length: 253
Alignm identity: 189
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 17, 68

Conread position: 2-258
Cow position:
Alignm length: 260
Alignm identity: 184
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 18, 73

Conread position: 3-225
Cow position:
Alignm length: 225
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 3-261
Cow position:
Alignm length: 260
Alignm identity: 176
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 3-285
Cow position:
Alignm length: 294
Alignm identity: 202
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 4-295
Cow position:
Alignm length: 296
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 11

Conread position: 5-295
Cow position:
Alignm length: 298
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 49

Conread position: 5-295
Cow position:
Alignm length: 295
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position:
Alignm length: 293
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 5-295
Cow position:
Alignm length: 293
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 44

Conread position: 5-295
Cow position:
Alignm length: 294
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 130

Conread position: 5-381
Cow position:
Alignm length: 388
Alignm identity: 221
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 28

Conread position: 7-208
Cow position:
Alignm length: 210
Alignm identity: 147
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 187

Conread position: 7-222
Cow position:
Alignm length: 217
Alignm identity: 164
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 11, 0

Conread position: 7-294
Cow position:
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 7-295
Cow position:
Alignm length: 291
Alignm identity: 210
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 12, 104

Conread position: 7-295
Cow position:
Alignm length: 290
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 133

Conread position: 7-295
Cow position:
Alignm length: 292
Alignm identity: 203
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 26

Conread position: 8-295
Cow position:
Alignm length: 289
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 40

Conread position: 9-204
Cow position:
Alignm length: 196
Alignm identity: 135
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 10-154
Cow position:
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 10-186
Cow position:
Alignm length: 179
Alignm identity: 133
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 10-265
Cow position:
Alignm length: 258
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 9, 69

Conread position: 10-270
Cow position:
Alignm length: 262
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-294
Cow position:
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 38

Conread position: 10-295
Cow position:
Alignm length: 292
Alignm identity: 200
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 9, 54

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 38

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 197

Conread position: 10-295
Cow position:
Alignm length: 292
Alignm identity: 209
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 9, 20

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 204
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 23

Conread position: 10-295
Cow position:
Alignm length: 289
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 179

Conread position: 17-206
Cow position:
Alignm length: 191
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 32

Conread position: 17-243
Cow position:
Alignm length: 227
Alignm identity: 149
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 17-285
Cow position:
Alignm length: 269
Alignm identity: 181
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 17-295
Cow position:
Alignm length: 280
Alignm identity: 196
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 243, 131

Conread position: 18-270
Cow position:
Alignm length: 253
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 18-295
Cow position:
Alignm length: 279
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 29

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 186
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 236, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 185
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 19-295
Cow position:
Alignm length: 277
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-654
Cow position:
Alignm length: 695
Alignm identity: 440
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 19, 28

Conread position: 21-209
Cow position:
Alignm length: 192
Alignm identity: 145
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 22, 71

Conread position: 21-218
Cow position:
Alignm length: 199
Alignm identity: 143
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 78, 0

Conread position: 22-294
Cow position:
Alignm length: 274
Alignm identity: 189
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 255, 90

Conread position: 22-295
Cow position:
Alignm length: 276
Alignm identity: 185
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 31, 62

Conread position: 22-298
Cow position:
Alignm length: 284
Alignm identity: 204
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 17, 188

Conread position: 24-295
Cow position:
Alignm length: 272
Alignm identity: 183
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 26-239
Cow position:
Alignm length: 214
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 26-257
Cow position:
Alignm length: 235
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 0

Conread position: 33-209
Cow position:
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 40-295
Cow position:
Alignm length: 257
Alignm identity: 173
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 44, 9

Conread position: 41-267
Cow position:
Alignm length: 229
Alignm identity: 159
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 37, 26

Conread position: 41-285
Cow position:
Alignm length: 246
Alignm identity: 174
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 239

Conread position: 41-295
Cow position:
Alignm length: 255
Alignm identity: 168
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 41-295
Cow position:
Alignm length: 259
Alignm identity: 184
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 108, 43

Conread position: 42-285
Cow position:
Alignm length: 250
Alignm identity: 177
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 101, 0

Conread position: 42-295
Cow position:
Alignm length: 255
Alignm identity: 168
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 78, 7

Conread position: 43-295
Cow position:
Alignm length: 255
Alignm identity: 175
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 9, 228

Conread position: 43-296
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 6, 0

Conread position: 45-295
Cow position:
Alignm length: 252
Alignm identity: 179
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 242, 65

Conread position: 45-296
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 163, 205

Conread position: 46-285
Cow position:
Alignm length: 243
Alignm identity: 179
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 47, 0

Conread position: 56-294
Cow position:
Alignm length: 243
Alignm identity: 160
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 71, 54

Conread position: 69-283
Cow position:
Alignm length: 215
Alignm identity: 160
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 89-267
Cow position:
Alignm length: 181
Alignm identity: 130
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 114-295
Cow position:
Alignm length: 183
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 174, 0

Conread position: 116-245
Cow position:
Alignm length: 130
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 116-285
Cow position:
Alignm length: 170
Alignm identity: 119
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 116-295
Cow position:
Alignm length: 183
Alignm identity: 142
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 114, 0

Conread position: 136-755
Cow position:
Alignm length: 665
Alignm identity: 427
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 204, 52

Conread position: 155-294
Cow position:
Alignm length: 140
Alignm identity: 103
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 160-869
Cow position:
Alignm length: 769
Alignm identity: 498
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 75, 29

Conread position: 293-736
Cow position:
Alignm length: 489
Alignm identity: 319
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 59, 47

Conread position: 293-736
Cow position:
Alignm length: 480
Alignm identity: 323
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 69, 47

Conread position: 293-754
Cow position:
Alignm length: 508
Alignm identity: 336
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 65, 278

Conread position: 296-836
Cow position:
Alignm length: 577
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 27

Conread position: 350-862
Cow position:
Alignm length: 561
Alignm identity: 376
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 23, 285

Conread position: 372-742
Cow position:
Alignm length: 393
Alignm identity: 255
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 50, 38

Conread position: 372-770
Cow position:
Alignm length: 413
Alignm identity: 265
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 25, 36

Conread position: 375-876
Cow position:
Alignm length: 550
Alignm identity: 370
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 37, 171

Conread position: 442-869
Cow position:
Alignm length: 446
Alignm identity: 293
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 93

Conread position: 444-702
Cow position:
Alignm length: 272
Alignm identity: 180
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 96

Conread position: 444-730
Cow position:
Alignm length: 302
Alignm identity: 198
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 92

Conread position: 444-741
Cow position:
Alignm length: 304
Alignm identity: 196
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position:
Alignm length: 313
Alignm identity: 204
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 99

Conread position: 444-742
Cow position:
Alignm length: 314
Alignm identity: 211
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 92

Conread position: 446-700
Cow position:
Alignm length: 269
Alignm identity: 180
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 66

Conread position: 446-752
Cow position:
Alignm length: 323
Alignm identity: 223
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 37, 96

Conread position: 446-754
Cow position:
Alignm length: 323
Alignm identity: 222
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 89

Conread position: 446-842
Cow position:
Alignm length: 426
Alignm identity: 271
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 102, 83

Conread position: 446-858
Cow position:
Alignm length: 430
Alignm identity: 277
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 55, 48

Conread position: 450-675
Cow position:
Alignm length: 238
Alignm identity: 163
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 38, 33

Conread position: 455-735
Cow position:
Alignm length: 289
Alignm identity: 194
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 111, 75

Conread position: 456-869
Cow position:
Alignm length: 436
Alignm identity: 284
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 32, 27

Conread position: 466-742
Cow position:
Alignm length: 285
Alignm identity: 186
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 99, 71

Conread position: 472-807
Cow position:
Alignm length: 344
Alignm identity: 220
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 116, 70

Conread position: 601-852
Cow position:
Alignm length: 257
Alignm identity: 185
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 31, 12

Show alignments to all cow chromosomes.