Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-231
Cow position: chr17:239301-239064 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 17, 0

Conread position: 1-232
Cow position: chr17:15372179-15371945 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 17, 24

Conread position: 1-271
Cow position: chr17:1656898-1657167 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 1-285
Cow position: chr17:18194761-18194479 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 21, 54

Conread position: 1-294
Cow position: chr17:13990399-13990690 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 46

Conread position: 1-294
Cow position: chr17:20099520-20099819 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 1-294
Cow position: chr17:20488891-20488595 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 38

Conread position: 1-294
Cow position: chr17:42265912-42265613 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 48

Conread position: 1-334
Cow position: chr17:1786988-1787329 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 239
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 18, 39

Conread position: 1-692
Cow position: chr17:2031076-2030341 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 30

Conread position: 1-698
Cow position: chr17:150944-151682 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 281

Conread position: 1-869
Cow position: chr17:4082965-4082077 (view UCSC Genome Browser custom track)
Alignm length: 913
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 18

Conread position: 1-870
Cow position: chr17:3707825-3708762 (view UCSC Genome Browser custom track)
Alignm length: 946
Alignm identity: 631
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 2-268
Cow position: chr17:38874582-38874312 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 17, 112

Conread position: 2-285
Cow position: chr17:36843-36567 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 17, 210

Conread position: 3-241
Cow position: chr17:16899359-16899596 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 192

Conread position: 3-267
Cow position: chr17:11783789-11783528 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 100

Conread position: 3-267
Cow position: chr17:14216079-14216348 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 121

Conread position: 3-267
Cow position: chr17:15436742-15436477 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 16, 202

Conread position: 3-267
Cow position: chr17:23323498-23323768 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 15, 78

Conread position: 3-267
Cow position: chr17:24783109-24782843 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 45

Conread position: 3-267
Cow position: chr17:31767091-31767356 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 181
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 3-294
Cow position: chr17:4061046-4060757 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 213

Conread position: 3-295
Cow position: chr17:2247121-2247412 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 50

Conread position: 3-298
Cow position: chr17:19020522-19020226 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 19, 94

Conread position: 5-287
Cow position: chr17:14240446-14240162 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position: chr17:54512-54797 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 279, 42

Conread position: 5-295
Cow position: chr17:2580569-2580279 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 84

Conread position: 5-295
Cow position: chr17:6069501-6069211 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 10

Conread position: 5-295
Cow position: chr17:6260807-6260514 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position: chr17:40805757-40805466 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 6-270
Cow position: chr17:1703748-1704010 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 15, 0

Conread position: 6-295
Cow position: chr17:11086774-11087065 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 6-295
Cow position: chr17:24029059-24029347 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 7-294
Cow position: chr17:3641888-3642174 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 201

Conread position: 7-295
Cow position: chr17:1881045-1880755 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 12, 145

Conread position: 10-265
Cow position: chr17:8210055-8209795 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 10-267
Cow position: chr17:2263052-2262789 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 9, 0

Conread position: 10-267
Cow position: chr17:6120657-6120397 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 103

Conread position: 10-292
Cow position: chr17:15851630-15851352 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 60

Conread position: 10-295
Cow position: chr17:15324772-15324486 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 227

Conread position: 10-295
Cow position: chr17:19267886-19268172 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 17-267
Cow position: chr17:34157053-34156803 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 103, 30

Conread position: 17-286
Cow position: chr17:251095-250830 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 34

Conread position: 17-295
Cow position: chr17:14895090-14894818 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 18-225
Cow position: chr17:6611555-6611762 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 18-252
Cow position: chr17:8202898-8202671 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 29

Conread position: 18-267
Cow position: chr17:43989433-43989182 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 102, 169

Conread position: 18-295
Cow position: chr17:16856586-16856861 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 65

Conread position: 19-294
Cow position: chr17:15156040-15156315 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 265, 5

Conread position: 20-295
Cow position: chr17:20086824-20087093 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 13, 66

Conread position: 26-295
Cow position: chr17:4941806-4942072 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 45, 0

Conread position: 28-247
Cow position: chr17:13705470-13705248 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 13, 136

Conread position: 33-267
Cow position: chr17:15142438-15142672 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 36, 45

Conread position: 33-294
Cow position: chr17:14040121-14040379 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 62, 51

Conread position: 41-285
Cow position: chr17:20403329-20403091 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 147, 0

Conread position: 42-222
Cow position: chr17:31533129-31532950 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 42-296
Cow position: chr17:227403-227656 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 42, 0

Conread position: 43-285
Cow position: chr17:11025607-11025847 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 41, 163

Conread position: 44-527
Cow position: chr17:2169379-2168871 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 333
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 262, 81

Conread position: 77-295
Cow position: chr17:20722493-20722276 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 89-295
Cow position: chr17:18102829-18103030 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 104-285
Cow position: chr17:14307006-14307183 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 289-742
Cow position: chr17:31767401-31767893 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 325
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 55, 137

Conread position: 293-715
Cow position: chr17:20087114-20087568 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 299
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 70, 134

Conread position: 293-742
Cow position: chr17:6120348-6119854 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 327
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 59, 47

Conread position: 293-742
Cow position: chr17:15436428-15435937 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 317
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 59, 47

Conread position: 293-742
Cow position: chr17:34156754-34156274 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 315
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 47

Conread position: 293-848
Cow position: chr17:24782796-24782211 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 374
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 65, 47

Conread position: 293-855
Cow position: chr17:14216397-14216986 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 388
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 47, 86

Conread position: 349-852
Cow position: chr17:15384835-15384305 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 27

Conread position: 371-856
Cow position: chr17:19020117-19019609 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 177

Conread position: 372-730
Cow position: chr17:1382277-1382656 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 172

Conread position: 372-755
Cow position: chr17:15142826-15143233 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 267
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 123

Conread position: 377-855
Cow position: chr17:8209644-8209143 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 320
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 33, 172

Conread position: 442-742
Cow position: chr17:227850-228162 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 205
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 99

Conread position: 442-748
Cow position: chr17:250625-250301 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 93

Conread position: 442-870
Cow position: chr17:1657385-1657816 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 300
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 32, 88

Conread position: 443-692
Cow position: chr17:15324285-15324023 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 98

Conread position: 444-686
Cow position: chr17:11376327-11376583 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 98

Conread position: 444-742
Cow position: chr17:2262560-2262248 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position: chr17:20665268-20665580 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 206
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 92

Conread position: 446-752
Cow position: chr17:4060559-4060241 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 37, 89

Conread position: 446-754
Cow position: chr17:24029549-24029858 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 95

Conread position: 446-869
Cow position: chr17:12669623-12670053 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 295
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 41, 67

Conread position: 453-742
Cow position: chr17:23324007-23324308 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 195
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 82

Conread position: 455-754
Cow position: chr17:15850849-15850539 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 213
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 86

Conread position: 476-742
Cow position: chr17:43952144-43952417 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 89, 52

Conread position: 514-913
Cow position: chr17:20488383-20487978 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 280
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 53, 21

Conread position: 635-877
Cow position: chr17:6001154-6001404 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 59

Conread position: 660-871
Cow position: chr17:16899924-16900137 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 102, 34

Show alignments to all cow chromosomes.