Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-251
Cow position: chr18:15856400-15856155 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 18, 9

Conread position: 1-285
Cow position: chr18:54271653-54271377 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 195
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 54

Conread position: 2-219
Cow position: chr18:29238065-29237847 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 10, 48

Conread position: 2-593
Cow position: chr18:51274886-51275525 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 50

Conread position: 3-203
Cow position: chr18:16392941-16393157 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 3-267
Cow position: chr18:11273946-11274212 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 116

Conread position: 3-267
Cow position: chr18:47742661-47742398 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 16, 79

Conread position: 3-295
Cow position: chr18:51661500-51661207 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 0

Conread position: 5-285
Cow position: chr18:16089293-16089017 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 80

Conread position: 7-285
Cow position: chr18:15850583-15850319 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 7-285
Cow position: chr18:40081256-40081528 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 13, 147

Conread position: 8-295
Cow position: chr18:14417138-14416851 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-295
Cow position: chr18:51482038-51481753 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 37, 179

Conread position: 10-251
Cow position: chr18:51239438-51239201 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 177

Conread position: 10-252
Cow position: chr18:54005020-54005262 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 193

Conread position: 10-284
Cow position: chr18:23798801-23798526 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-285
Cow position: chr18:32653370-32653093 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-294
Cow position: chr18:16079822-16079534 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 0

Conread position: 10-294
Cow position: chr18:29074140-29073866 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 112, 13

Conread position: 10-294
Cow position: chr18:54022980-54023267 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 212

Conread position: 10-295
Cow position: chr18:14131545-14131259 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr18:16175464-16175748 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 261

Conread position: 10-295
Cow position: chr18:27837158-27837444 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr18:28972732-28973018 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr18:40479545-40479255 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 174

Conread position: 10-295
Cow position: chr18:51342838-51342552 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 191
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 241

Conread position: 10-296
Cow position: chr18:16869572-16869292 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 115

Conread position: 10-381
Cow position: chr18:19353512-19353128 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 9, 343

Conread position: 11-295
Cow position: chr18:32768808-32768524 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 102

Conread position: 12-284
Cow position: chr18:33300472-33300206 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 182
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 116, 63

Conread position: 17-258
Cow position: chr18:6061659-6061894 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 83

Conread position: 17-369
Cow position: chr18:37489659-37489312 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 235
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 17, 42

Conread position: 18-196
Cow position: chr18:45946704-45946882 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 18-222
Cow position: chr18:10648572-10648368 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 18-294
Cow position: chr18:52652052-52651779 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 18-295
Cow position: chr18:33952438-33952714 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 197, 0

Conread position: 18-295
Cow position: chr18:36509485-36509205 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 18-295
Cow position: chr18:41839665-41839942 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 136, 43

Conread position: 22-293
Cow position: chr18:4947190-4946924 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 17, 0

Conread position: 26-283
Cow position: chr18:17197278-17197534 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 141, 13

Conread position: 26-854
Cow position: chr18:25364340-25363469 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 545
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 90, 84

Conread position: 27-267
Cow position: chr18:30848537-30848777 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 160
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 96, 82

Conread position: 28-285
Cow position: chr18:37507094-37506837 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 39-631
Cow position: chr18:19405448-19406073 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 392
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 164, 72

Conread position: 41-294
Cow position: chr18:54170416-54170668 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 153, 0

Conread position: 41-295
Cow position: chr18:27988312-27988057 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 43-236
Cow position: chr18:18842487-18842676 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 114, 32

Conread position: 43-754
Cow position: chr18:33269939-33269175 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 402

Conread position: 53-295
Cow position: chr18:33751118-33750879 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 119, 0

Conread position: 55-238
Cow position: chr18:36255800-36255985 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 89, 0

Conread position: 56-717
Cow position: chr18:51275935-51276620 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 444
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 261, 131

Conread position: 57-253
Cow position: chr18:56429565-56429758 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 59, 53

Conread position: 77-295
Cow position: chr18:25351840-25351622 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 95-291
Cow position: chr18:51462023-51462218 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 187, 0

Conread position: 114-208
Cow position: chr18:16138123-16138029 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 135-285
Cow position: chr18:40725628-40725782 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 293-702
Cow position: chr18:51661186-51660741 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 296
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 59, 13

Conread position: 293-736
Cow position: chr18:33952735-33953215 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 312
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 47

Conread position: 293-742
Cow position: chr18:11274261-11274752 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 326
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 59, 47

Conread position: 371-755
Cow position: chr18:55088169-55088583 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 272
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 39, 198

Conread position: 372-742
Cow position: chr18:51462333-51462725 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 261
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 174

Conread position: 422-871
Cow position: chr18:46867879-46868333 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 16

Conread position: 442-730
Cow position: chr18:22603151-22602853 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 93

Conread position: 444-742
Cow position: chr18:24040060-24040378 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 7, 92

Conread position: 444-855
Cow position: chr18:19353036-19352630 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 267
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 7, 92

Conread position: 444-870
Cow position: chr18:8169370-8168932 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 12

Conread position: 446-736
Cow position: chr18:33336532-33336229 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 210
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 30, 88

Conread position: 446-754
Cow position: chr18:14416647-14416325 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 96

Conread position: 446-754
Cow position: chr18:36509001-36508682 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 37, 67

Conread position: 446-797
Cow position: chr18:29765641-29765269 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 254
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 37, 95

Conread position: 446-839
Cow position: chr18:54170870-54171272 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 272
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 38, 89

Conread position: 466-742
Cow position: chr18:51342323-51342040 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 99, 64

Conread position: 466-754
Cow position: chr18:54004153-54003870 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 88, 64

Conread position: 514-870
Cow position: chr18:46855212-46855572 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 253
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 85, 23

Conread position: 702-862
Cow position: chr18:37158700-37158859 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 26

Show alignments to all cow chromosomes.