Cow genome map
| Conread name: | Ss1.1-rthg14_d21.5 |
| Conread position: | 1-190 |
| Cow position: | chr19:48861038-48861229 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-218 |
| Cow position: | chr19:50723718-50723499 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-285 |
| Cow position: | chr19:347163-347447 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 143 |
| Conread position: | 1-285 |
| Cow position: | chr19:1656594-1656299 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 1-285 |
| Cow position: | chr19:5027904-5028191 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 1-294 |
| Cow position: | chr19:32181914-32182211 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 206 |
| Conread position: | 2-187 |
| Cow position: | chr19:28367176-28366993 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 2-209 |
| Cow position: | chr19:35379746-35379546 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 2-253 |
| Cow position: | chr19:35384449-35384697 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 108 |
| Conread position: | 3-247 |
| Cow position: | chr19:20105888-20105643 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 3-267 |
| Cow position: | chr19:39461-39194 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-267 |
| Cow position: | chr19:7343230-7342965 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 3-267 |
| Cow position: | chr19:28594714-28594449 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-295 |
| Cow position: | chr19:773763-773468 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 3-295 |
| Cow position: | chr19:39699622-39699335 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 17, 113 |
| Conread position: | 3-736 |
| Cow position: | chr19:40851287-40852067 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 5-195 |
| Cow position: | chr19:892462-892660 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-270 |
| Cow position: | chr19:7489511-7489240 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-285 |
| Cow position: | chr19:3139092-3138811 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 5-291 |
| Cow position: | chr19:2273224-2273511 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 202 |
| Conread position: | 5-295 |
| Cow position: | chr19:33942771-33942475 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 7-232 |
| Cow position: | chr19:205142-204914 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 7-295 |
| Cow position: | chr19:438279-438566 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 266 |
| Conread position: | 7-295 |
| Cow position: | chr19:28580504-28580788 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 12, 96 |
| Conread position: | 9-263 |
| Cow position: | chr19:11522008-11522263 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 9-294 |
| Cow position: | chr19:28405547-28405836 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 10-212 |
| Cow position: | chr19:10366059-10365858 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 10-232 |
| Cow position: | chr19:5730026-5729806 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 10-285 |
| Cow position: | chr19:39391665-39391389 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-294 |
| Cow position: | chr19:1588060-1588346 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 10-294 |
| Cow position: | chr19:12774270-12773989 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 10-295 |
| Cow position: | chr19:33874581-33874296 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 10-295 |
| Cow position: | chr19:39184382-39184668 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 16-251 |
| Cow position: | chr19:5652574-5652804 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 110, 94 |
| Conread position: | 17-240 |
| Cow position: | chr19:36263740-36263960 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 17-268 |
| Cow position: | chr19:30747383-30747134 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 17-295 |
| Cow position: | chr19:9706991-9707259 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 99, 30 |
| Conread position: | 18-253 |
| Cow position: | chr19:7070452-7070225 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 129, 40 |
| Conread position: | 18-267 |
| Cow position: | chr19:43144859-43144608 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 31 |
| Conread position: | 20-295 |
| Cow position: | chr19:135648-135921 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 124, 25 |
| Conread position: | 22-209 |
| Cow position: | chr19:1489889-1490070 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 22-268 |
| Cow position: | chr19:342363-342116 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 22-295 |
| Cow position: | chr19:40886602-40886873 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 166, 76 |
| Conread position: | 26-226 |
| Cow position: | chr19:10509320-10509520 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 190, 181 |
| Conread position: | 26-231 |
| Cow position: | chr19:173375-173167 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 28-295 |
| Cow position: | chr19:32194151-32193884 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-267 |
| Cow position: | chr19:52150703-52150935 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 42-295 |
| Cow position: | chr19:4386744-4386494 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 43-294 |
| Cow position: | chr19:5900380-5900635 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 61-226 |
| Cow position: | chr19:43432261-43432100 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 78-253 |
| Cow position: | chr19:7069616-7069445 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 78-260 |
| Cow position: | chr19:34047305-34047129 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 93-240 |
| Cow position: | chr19:3113327-3113183 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 98-285 |
| Cow position: | chr19:32204211-32204023 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 105-294 |
| Cow position: | chr19:256293-256104 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 103, 126 |
| Conread position: | 109-282 |
| Cow position: | chr19:6549064-6548891 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-664 |
| Cow position: | chr19:5900653-5901059 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 271 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 293-741 |
| Cow position: | chr19:20105559-20105063 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 332 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 294-874 |
| Cow position: | chr19:3138775-3138166 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 384 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 86, 260 |
| Conread position: | 363-737 |
| Cow position: | chr19:35384983-35385378 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 194 |
| Conread position: | 372-861 |
| Cow position: | chr19:32182329-32182838 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 196 |
| Conread position: | 440-754 |
| Cow position: | chr19:33874103-33873780 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 444-730 |
| Cow position: | chr19:7342736-7342441 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 7, 99 |
| Conread position: | 444-742 |
| Cow position: | chr19:43144382-43144074 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-743 |
| Cow position: | chr19:773264-772954 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-757 |
| Cow position: | chr19:52151161-52151486 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-761 |
| Cow position: | chr19:40887074-40887391 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 444-855 |
| Cow position: | chr19:32211404-32211824 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 98 |
| Conread position: | 446-731 |
| Cow position: | chr19:2273712-2274009 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 261 |
| Conread position: | 446-862 |
| Cow position: | chr19:27051848-27052264 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 120, 91 |
| Conread position: | 446-869 |
| Cow position: | chr19:39668842-39669274 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 116 |
| Conread position: | 446-884 |
| Cow position: | chr19:136345-136804 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 91 |
| Conread position: | 448-742 |
| Cow position: | chr19:28593926-28593621 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 448-829 |
| Cow position: | chr19:35980809-35980426 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 448-857 |
| Cow position: | chr19:32203812-32203398 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 466-754 |
| Cow position: | chr19:172852-172564 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 154, 70 |
| Conread position: | 630-880 |
| Cow position: | chr19:35377638-35377381 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 116, 64 |
| Conread position: | 635-869 |
| Cow position: | chr19:32222548-32222787 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 62 |
| Conread position: | 648-885 |
| Cow position: | chr19:39689481-39689243 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 96, 45 |
| Conread position: | 657-861 |
| Cow position: | chr19:17019280-17019071 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 109, 39 |
Show alignments to all cow chromosomes.