Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-190
Cow position:
Alignm length: 192
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 1-218
Cow position:
Alignm length: 220
Alignm identity: 165
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 1-285
Cow position:
Alignm length: 291
Alignm identity: 187
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 143

Conread position: 1-285
Cow position:
Alignm length: 299
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 41

Conread position: 1-285
Cow position:
Alignm length: 291
Alignm identity: 207
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 18, 98

Conread position: 1-294
Cow position:
Alignm length: 300
Alignm identity: 212
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 206

Conread position: 2-187
Cow position:
Alignm length: 187
Alignm identity: 140
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 114, 20

Conread position: 2-209
Cow position:
Alignm length: 210
Alignm identity: 158
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 25, 37

Conread position: 2-253
Cow position:
Alignm length: 254
Alignm identity: 187
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 108

Conread position: 3-247
Cow position:
Alignm length: 246
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 3-267
Cow position:
Alignm length: 268
Alignm identity: 181
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 16, 0

Conread position: 3-267
Cow position:
Alignm length: 267
Alignm identity: 188
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 16, 79

Conread position: 3-267
Cow position:
Alignm length: 266
Alignm identity: 182
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 3-295
Cow position:
Alignm length: 296
Alignm identity: 194
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 3-295
Cow position:
Alignm length: 297
Alignm identity: 195
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 17, 113

Conread position: 3-736
Cow position:
Alignm length: 786
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 80

Conread position: 5-195
Cow position:
Alignm length: 199
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 5-270
Cow position:
Alignm length: 272
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 5-285
Cow position:
Alignm length: 285
Alignm identity: 202
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 26

Conread position: 5-291
Cow position:
Alignm length: 291
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 202

Conread position: 5-295
Cow position:
Alignm length: 297
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 7-232
Cow position:
Alignm length: 229
Alignm identity: 168
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 12, 0

Conread position: 7-295
Cow position:
Alignm length: 290
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 266

Conread position: 7-295
Cow position:
Alignm length: 291
Alignm identity: 203
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 12, 96

Conread position: 9-263
Cow position:
Alignm length: 256
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 9-294
Cow position:
Alignm length: 290
Alignm identity: 205
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 10, 0

Conread position: 10-212
Cow position:
Alignm length: 204
Alignm identity: 137
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 106, 100

Conread position: 10-232
Cow position:
Alignm length: 224
Alignm identity: 169
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 75

Conread position: 10-285
Cow position:
Alignm length: 277
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-294
Cow position:
Alignm length: 290
Alignm identity: 206
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 9, 23

Conread position: 10-294
Cow position:
Alignm length: 286
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 38

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 38

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 16-251
Cow position:
Alignm length: 237
Alignm identity: 163
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 110, 94

Conread position: 17-240
Cow position:
Alignm length: 224
Alignm identity: 147
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 17-268
Cow position:
Alignm length: 255
Alignm identity: 171
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 30

Conread position: 17-295
Cow position:
Alignm length: 281
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 99, 30

Conread position: 18-253
Cow position:
Alignm length: 237
Alignm identity: 176
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 129, 40

Conread position: 18-267
Cow position:
Alignm length: 253
Alignm identity: 169
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 92, 31

Conread position: 20-295
Cow position:
Alignm length: 277
Alignm identity: 182
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 124, 25

Conread position: 22-209
Cow position:
Alignm length: 188
Alignm identity: 147
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 22-268
Cow position:
Alignm length: 248
Alignm identity: 174
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 31, 0

Conread position: 22-295
Cow position:
Alignm length: 275
Alignm identity: 186
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 166, 76

Conread position: 26-226
Cow position:
Alignm length: 202
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 190, 181

Conread position: 26-231
Cow position:
Alignm length: 213
Alignm identity: 156
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 16, 34

Conread position: 28-295
Cow position:
Alignm length: 268
Alignm identity: 176
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 32-267
Cow position:
Alignm length: 236
Alignm identity: 165
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 16, 0

Conread position: 42-295
Cow position:
Alignm length: 254
Alignm identity: 186
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 164, 0

Conread position: 43-294
Cow position:
Alignm length: 256
Alignm identity: 171
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 241, 0

Conread position: 61-226
Cow position:
Alignm length: 167
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 49

Conread position: 78-253
Cow position:
Alignm length: 177
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 32

Conread position: 78-260
Cow position:
Alignm length: 183
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 93-240
Cow position:
Alignm length: 149
Alignm identity: 114
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 25, 17

Conread position: 98-285
Cow position:
Alignm length: 189
Alignm identity: 149
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 103, 0

Conread position: 105-294
Cow position:
Alignm length: 192
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 103, 126

Conread position: 109-282
Cow position:
Alignm length: 174
Alignm identity: 124
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 293-664
Cow position:
Alignm length: 409
Alignm identity: 271
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 59, 47

Conread position: 293-741
Cow position:
Alignm length: 498
Alignm identity: 332
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 59, 47

Conread position: 294-874
Cow position:
Alignm length: 613
Alignm identity: 384
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 86, 260

Conread position: 363-737
Cow position:
Alignm length: 403
Alignm identity: 268
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 8, 194

Conread position: 372-861
Cow position:
Alignm length: 519
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 196

Conread position: 440-754
Cow position:
Alignm length: 328
Alignm identity: 220
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 43, 101

Conread position: 444-730
Cow position:
Alignm length: 302
Alignm identity: 201
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 7, 99

Conread position: 444-742
Cow position:
Alignm length: 313
Alignm identity: 210
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 7, 92

Conread position: 444-743
Cow position:
Alignm length: 316
Alignm identity: 214
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 92

Conread position: 444-757
Cow position:
Alignm length: 329
Alignm identity: 214
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 92

Conread position: 444-761
Cow position:
Alignm length: 330
Alignm identity: 222
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 39, 91

Conread position: 444-855
Cow position:
Alignm length: 429
Alignm identity: 273
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 7, 98

Conread position: 446-731
Cow position:
Alignm length: 300
Alignm identity: 206
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 261

Conread position: 446-862
Cow position:
Alignm length: 427
Alignm identity: 280
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 120, 91

Conread position: 446-869
Cow position:
Alignm length: 439
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 116

Conread position: 446-884
Cow position:
Alignm length: 468
Alignm identity: 300
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 71, 91

Conread position: 448-742
Cow position:
Alignm length: 310
Alignm identity: 206
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 35, 86

Conread position: 448-829
Cow position:
Alignm length: 393
Alignm identity: 255
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 35, 86

Conread position: 448-857
Cow position:
Alignm length: 430
Alignm identity: 290
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 20, 61

Conread position: 466-754
Cow position:
Alignm length: 293
Alignm identity: 199
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 154, 70

Conread position: 630-880
Cow position:
Alignm length: 259
Alignm identity: 182
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 116, 64

Conread position: 635-869
Cow position:
Alignm length: 242
Alignm identity: 162
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 62

Conread position: 648-885
Cow position:
Alignm length: 243
Alignm identity: 166
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 96, 45

Conread position: 657-861
Cow position:
Alignm length: 211
Alignm identity: 160
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 109, 39

Show alignments to all cow chromosomes.