Cow genome map


           Conread name:
           Ss1.1-rthg14_d21.5
        

               Conread position:
               1-184
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 9
               

               Conread position:
               1-221
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               1-253
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               18, 51
               

               Conread position:
               1-285
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               18, 47
               

               Conread position:
               1-293
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 140
               

               Conread position:
               1-294
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               18, 113
               

               Conread position:
               1-294
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 258
               

               Conread position:
               1-295
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               18, 112
               

               Conread position:
               1-869
               

               Cow position:
               
               

               Alignm length:
               907
               

               Alignm identity:
               589
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 165
               

               Conread position:
               2-249
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               17, 45
               

               Conread position:
               3-267
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               3-267
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               3-285
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               16, 243
               

               Conread position:
               3-295
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               19, 79
               

               Conread position:
               3-295
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               16, 108
               

               Conread position:
               5-285
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 158
               

               Conread position:
               5-295
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 202
               

               Conread position:
               5-295
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 61
               

               Conread position:
               5-295
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               14, 26
               

               Conread position:
               5-295
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               5-295
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               6-262
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               13, 108
               

               Conread position:
               7-295
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 184
               

               Conread position:
               10-252
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               193, 100
               

               Conread position:
               10-285
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               10-294
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               10-295
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 229
               

               Conread position:
               10-295
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               14-221
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               6, 62
               

               Conread position:
               14-251
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               201, 0
               

               Conread position:
               17-285
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               237, 24
               

               Conread position:
               18-209
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               11, 30
               

               Conread position:
               18-273
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               18-295
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               24-295
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               25-295
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               26-285
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               67, 58
               

               Conread position:
               26-293
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 23
               

               Conread position:
               27-295
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               260, 12
               

               Conread position:
               35-185
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               10, 138
               

               Conread position:
               41-266
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               10, 141
               

               Conread position:
               41-285
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               52, 17
               

               Conread position:
               41-291
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               13, 59
               

               Conread position:
               61-285
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               74-295
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               101-260
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               103-293
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 30
               

               Conread position:
               114-277
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               115-253
               

               Cow position:
               
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               131-295
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               135-285
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               113, 105
               

               Conread position:
               146-298
               

               Cow position:
               
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               293-730
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               309
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               81, 266
               

               Conread position:
               293-736
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               298
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 37
               

               Conread position:
               293-861
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 118
               

               Conread position:
               293-871
               

               Cow position:
               
               

               Alignm length:
               623
               

               Alignm identity:
               408
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               36, 283
               

               Conread position:
               372-703
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               42, 178
               

               Conread position:
               372-742
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               256
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               50, 38
               

               Conread position:
               372-742
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               38, 177
               

               Conread position:
               383-870
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               329
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               32, 139
               

               Conread position:
               444-767
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               40, 90
               

               Conread position:
               446-850
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               272
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               110, 14
               

               Conread position:
               448-851
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 94
               

               Conread position:
               450-752
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               33, 83
               

               Conread position:
               452-680
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 65
               

               Conread position:
               455-768
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               28, 252
               

               Conread position:
               455-879
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               295
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               29, 87
               

               Conread position:
               467-745
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               132, 70
               

               Conread position:
               470-692
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               78, 59
               

               Conread position:
               626-869
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               119, 67
               

               Conread position:
               688-861
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               73, 8
               
Show alignments to all cow chromosomes.