Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-184
Cow position: chr20:27896924-27897105 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 9

Conread position: 1-221
Cow position: chr20:8216639-8216417 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 1-253
Cow position: chr20:5466165-5465920 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 51

Conread position: 1-285
Cow position: chr20:19355891-19355603 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 18, 47

Conread position: 1-293
Cow position: chr20:13433477-13433768 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 140

Conread position: 1-294
Cow position: chr20:13678925-13679217 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 201
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 113

Conread position: 1-294
Cow position: chr20:24615741-24616041 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 258

Conread position: 1-295
Cow position: chr20:15066605-15066314 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 18, 112

Conread position: 1-869
Cow position: chr20:18314222-18315100 (view UCSC Genome Browser custom track)
Alignm length: 907
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 165

Conread position: 2-249
Cow position: chr20:31497974-31498221 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 45

Conread position: 3-267
Cow position: chr20:8973695-8973961 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 3-267
Cow position: chr20:19439038-19438773 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 16, 0

Conread position: 3-285
Cow position: chr20:21395054-21394767 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 16, 243

Conread position: 3-295
Cow position: chr20:16105416-16105710 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 19, 79

Conread position: 3-295
Cow position: chr20:37581336-37581041 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 16, 108

Conread position: 5-285
Cow position: chr20:35125614-35125335 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 158

Conread position: 5-295
Cow position: chr20:13764025-13763737 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 202

Conread position: 5-295
Cow position: chr20:15293122-15292832 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 61

Conread position: 5-295
Cow position: chr20:17660958-17661246 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 26

Conread position: 5-295
Cow position: chr20:23468542-23468833 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position: chr20:28161943-28161649 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 6-262
Cow position: chr20:1742975-1742720 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 108

Conread position: 7-295
Cow position: chr20:12437590-12437877 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 184

Conread position: 10-252
Cow position: chr20:5229396-5229635 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 193, 100

Conread position: 10-285
Cow position: chr20:12569637-12569360 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-294
Cow position: chr20:23799999-23799714 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr20:15096765-15097046 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 229

Conread position: 10-295
Cow position: chr20:27870319-27870033 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 14-221
Cow position: chr20:5791461-5791262 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 62

Conread position: 14-251
Cow position: chr20:2399744-2399508 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 157
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 201, 0

Conread position: 17-285
Cow position: chr20:28303995-28303736 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 237, 24

Conread position: 18-209
Cow position: chr20:35105884-35105693 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 11, 30

Conread position: 18-273
Cow position: chr20:7083305-7083555 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 18-295
Cow position: chr20:5536039-5535764 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 24-295
Cow position: chr20:38351774-38351503 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 175
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 25-295
Cow position: chr20:29949603-29949333 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 26-285
Cow position: chr20:10101607-10101863 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 67, 58

Conread position: 26-293
Cow position: chr20:10839623-10839885 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 23

Conread position: 27-295
Cow position: chr20:14869859-14870118 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 260, 12

Conread position: 35-185
Cow position: chr20:2112521-2112671 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 10, 138

Conread position: 41-266
Cow position: chr20:823843-823618 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 10, 141

Conread position: 41-285
Cow position: chr20:19884561-19884327 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 17

Conread position: 41-291
Cow position: chr20:28564506-28564760 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 59

Conread position: 61-285
Cow position: chr20:871909-872122 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 76, 0

Conread position: 74-295
Cow position: chr20:21915369-21915149 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 118, 0

Conread position: 101-260
Cow position: chr20:30576470-30576313 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 103-293
Cow position: chr20:37442276-37442468 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 30

Conread position: 114-277
Cow position: chr20:8992206-8992367 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 115-253
Cow position: chr20:42906207-42906068 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 124, 0

Conread position: 131-295
Cow position: chr20:7113198-7113358 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 135-285
Cow position: chr20:30685308-30685158 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 113, 105

Conread position: 146-298
Cow position: chr20:18324210-18324360 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 293-730
Cow position: chr20:25961903-25961430 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 309
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 81, 266

Conread position: 293-736
Cow position: chr20:19438724-19438260 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 298
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 37

Conread position: 293-861
Cow position: chr20:10839903-10840499 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 118

Conread position: 293-871
Cow position: chr20:10854545-10855153 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 408
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 36, 283

Conread position: 372-703
Cow position: chr20:42905916-42905575 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 235
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 42, 178

Conread position: 372-742
Cow position: chr20:823473-823082 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 256
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 50, 38

Conread position: 372-742
Cow position: chr20:38351387-38350993 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 266
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 177

Conread position: 383-870
Cow position: chr20:18324480-18324970 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 329
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 139

Conread position: 444-767
Cow position: chr20:28161400-28161066 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 40, 90

Conread position: 446-850
Cow position: chr20:20753864-20754261 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 272
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 110, 14

Conread position: 448-851
Cow position: chr20:8992594-8993011 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 94

Conread position: 450-752
Cow position: chr20:13679417-13679735 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 218
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 83

Conread position: 452-680
Cow position: chr20:22716711-22716947 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 65

Conread position: 455-768
Cow position: chr20:35125117-35124790 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 28, 252

Conread position: 455-879
Cow position: chr20:8216137-8215690 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 295
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 29, 87

Conread position: 467-745
Cow position: chr20:3271302-3271022 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 132, 70

Conread position: 470-692
Cow position: chr20:7114886-7115116 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 59

Conread position: 626-869
Cow position: chr20:3893551-3893305 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 67

Conread position: 688-861
Cow position: chr20:13434164-13434336 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 73, 8

Show alignments to all cow chromosomes.