Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-156
Cow position: chr21:4096425-4096270 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 18, 82

Conread position: 1-294
Cow position: chr21:18817309-18817613 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 18, 0

Conread position: 1-295
Cow position: chr21:2417453-2417159 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 18, 77

Conread position: 1-295
Cow position: chr21:21943517-21943818 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 194
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 251

Conread position: 1-298
Cow position: chr21:34001443-34001737 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 21

Conread position: 2-268
Cow position: chr21:25782874-25782611 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 17, 194

Conread position: 2-294
Cow position: chr21:21519847-21519574 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 57

Conread position: 3-209
Cow position: chr21:45782719-45782511 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 15, 47

Conread position: 3-216
Cow position: chr21:26836134-26835913 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 16, 67

Conread position: 3-242
Cow position: chr21:42914604-42914362 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 16, 187

Conread position: 3-267
Cow position: chr21:39426296-39426035 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 40, 81

Conread position: 3-295
Cow position: chr21:5840028-5840320 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 45

Conread position: 3-295
Cow position: chr21:37046857-37046566 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 190
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 16, 147

Conread position: 3-295
Cow position: chr21:39088236-39087948 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 195
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 19, 47

Conread position: 4-285
Cow position: chr21:4185139-4184858 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 15, 44

Conread position: 5-253
Cow position: chr21:6625007-6624758 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 14, 143

Conread position: 5-294
Cow position: chr21:30312-30022 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 224

Conread position: 5-294
Cow position: chr21:2539847-2540128 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 86

Conread position: 5-295
Cow position: chr21:147165-146873 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position: chr21:40270439-40270728 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 183

Conread position: 7-200
Cow position: chr21:2673773-2673968 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 12, 43

Conread position: 7-285
Cow position: chr21:3780000-3779722 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 12, 218

Conread position: 7-285
Cow position: chr21:5018347-5018067 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 12, 184

Conread position: 7-291
Cow position: chr21:13313988-13313707 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 83

Conread position: 7-291
Cow position: chr21:35144990-35144706 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 273

Conread position: 7-295
Cow position: chr21:27069730-27070023 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 223

Conread position: 8-295
Cow position: chr21:26402255-26402544 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 10-192
Cow position: chr21:30598250-30598428 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 9, 65

Conread position: 10-285
Cow position: chr21:2882507-2882784 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr21:10851314-10851024 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 9, 136

Conread position: 10-742
Cow position: chr21:37372467-37371679 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 350

Conread position: 11-295
Cow position: chr21:37149267-37148977 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 76

Conread position: 17-197
Cow position: chr21:45786209-45786391 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 94

Conread position: 17-242
Cow position: chr21:2938278-2938499 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 95, 0

Conread position: 17-728
Cow position: chr21:2512068-2511343 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 252

Conread position: 18-221
Cow position: chr21:48292672-48292467 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 12, 70

Conread position: 18-267
Cow position: chr21:12054787-12055032 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 18-267
Cow position: chr21:46916896-46916647 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 102, 92

Conread position: 18-282
Cow position: chr21:1688935-1689203 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 56, 97

Conread position: 18-285
Cow position: chr21:1192977-1192714 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 29, 0

Conread position: 18-285
Cow position: chr21:10567888-10567631 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 18-285
Cow position: chr21:21915906-21915644 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 96

Conread position: 18-295
Cow position: chr21:33253401-33253121 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 161, 106

Conread position: 18-317
Cow position: chr21:37936045-37935743 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 266, 285

Conread position: 20-283
Cow position: chr21:3169613-3169354 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 239, 17

Conread position: 22-295
Cow position: chr21:360862-360587 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 20, 0

Conread position: 24-253
Cow position: chr21:2712176-2711952 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 26-285
Cow position: chr21:28256641-28256387 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 96, 56

Conread position: 26-285
Cow position: chr21:33954578-33954326 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 174
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 85

Conread position: 26-294
Cow position: chr21:1287005-1287273 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 26-294
Cow position: chr21:49325672-49325406 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 27-243
Cow position: chr21:28985330-28985113 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 9, 200

Conread position: 28-294
Cow position: chr21:37718810-37719078 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 90, 13

Conread position: 40-253
Cow position: chr21:21222769-21222982 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 101

Conread position: 41-225
Cow position: chr21:4588798-4588980 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 41-250
Cow position: chr21:34823017-34823224 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 8, 0

Conread position: 41-294
Cow position: chr21:31515129-31515383 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 64, 0

Conread position: 44-220
Cow position: chr21:468060-467887 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 10, 58

Conread position: 53-192
Cow position: chr21:27284638-27284499 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 56-294
Cow position: chr21:20743398-20743641 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 174, 65

Conread position: 57-199
Cow position: chr21:36979731-36979873 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 57-243
Cow position: chr21:16693410-16693226 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 59-225
Cow position: chr21:28613274-28613109 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 58, 51

Conread position: 63-206
Cow position: chr21:23297647-23297789 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 47

Conread position: 70-285
Cow position: chr21:49295777-49295561 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 0

Conread position: 76-289
Cow position: chr21:27566801-27566593 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 131, 0

Conread position: 78-267
Cow position: chr21:11452495-11452685 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 92-253
Cow position: chr21:4077980-4077819 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 95-350
Cow position: chr21:446258-445990 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 21, 15

Conread position: 122-294
Cow position: chr21:5015191-5015364 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 137-294
Cow position: chr21:47941960-47941799 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 147, 0

Conread position: 293-742
Cow position: chr21:12055079-12055567 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 319
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 47

Conread position: 293-829
Cow position: chr21:4094428-4093857 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 385
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 58, 277

Conread position: 293-855
Cow position: chr21:11452734-11453331 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 387
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 65, 47

Conread position: 372-730
Cow position: chr21:37046450-37046066 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 257
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 183

Conread position: 372-736
Cow position: chr21:28736066-28735676 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 263
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 43, 183

Conread position: 372-856
Cow position: chr21:23603368-23602872 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 168

Conread position: 377-730
Cow position: chr21:11406171-11406550 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 248
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 33, 172

Conread position: 390-685
Cow position: chr21:37148847-37148528 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 27, 60

Conread position: 441-876
Cow position: chr21:21925570-21926018 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 5

Conread position: 442-675
Cow position: chr21:47941602-47941359 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 91

Conread position: 443-866
Cow position: chr21:21518266-21517860 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 301
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 34, 97

Conread position: 444-730
Cow position: chr21:2475796-2476095 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position: chr21:11506340-11506030 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 97

Conread position: 444-742
Cow position: chr21:39425806-39425497 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 92

Conread position: 444-789
Cow position: chr21:2711242-2710898 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 234
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 115, 92

Conread position: 444-855
Cow position: chr21:4091393-4090974 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 268
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 7, 92

Conread position: 446-804
Cow position: chr21:23812919-23812552 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 249
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 95

Conread position: 448-850
Cow position: chr21:25976018-25975593 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 34, 87

Conread position: 452-685
Cow position: chr21:47949796-47949556 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 107, 78

Conread position: 452-731
Cow position: chr21:467613-467341 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 190
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 31

Conread position: 456-847
Cow position: chr21:21915420-21915021 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 270
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 27, 82

Conread position: 462-747
Cow position: chr21:7266799-7267103 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 21, 73

Conread position: 472-688
Cow position: chr21:12803340-12803562 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 82, 0

Conread position: 506-871
Cow position: chr21:34053652-34054015 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 52, 30

Conread position: 693-861
Cow position: chr21:24885689-24885514 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 60, 0

Show alignments to all cow chromosomes.