Cow genome map


           Conread name:
           Ss1.1-rthg14_d21.5
        

               Conread position:
               1-156
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               18, 82
               

               Conread position:
               1-294
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               1-295
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               215
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               18, 77
               

               Conread position:
               1-295
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               1-298
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 21
               

               Conread position:
               2-268
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               17, 194
               

               Conread position:
               2-294
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               218
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               17, 57
               

               Conread position:
               3-209
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               15, 47
               

               Conread position:
               3-216
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               16, 67
               

               Conread position:
               3-242
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               16, 187
               

               Conread position:
               3-267
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               40, 81
               

               Conread position:
               3-295
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 45
               

               Conread position:
               3-295
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               16, 147
               

               Conread position:
               3-295
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               19, 47
               

               Conread position:
               4-285
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               15, 44
               

               Conread position:
               5-253
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               14, 143
               

               Conread position:
               5-294
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               209
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               14, 224
               

               Conread position:
               5-294
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 86
               

               Conread position:
               5-295
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               5-295
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               210
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               14, 183
               

               Conread position:
               7-200
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               12, 43
               

               Conread position:
               7-285
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               12, 218
               

               Conread position:
               7-285
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               12, 184
               

               Conread position:
               7-291
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 83
               

               Conread position:
               7-291
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 273
               

               Conread position:
               7-295
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 223
               

               Conread position:
               8-295
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               10-192
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 65
               

               Conread position:
               10-285
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               10-295
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               9, 136
               

               Conread position:
               10-742
               

               Cow position:
               
               

               Alignm length:
               792
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 350
               

               Conread position:
               11-295
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               8, 76
               

               Conread position:
               17-197
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               76, 94
               

               Conread position:
               17-242
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               17-728
               

               Cow position:
               
               

               Alignm length:
               735
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 252
               

               Conread position:
               18-221
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               12, 70
               

               Conread position:
               18-267
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               18-267
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               102, 92
               

               Conread position:
               18-282
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               56, 97
               

               Conread position:
               18-285
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               189
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               18-285
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               18-285
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               20, 96
               

               Conread position:
               18-295
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               161, 106
               

               Conread position:
               18-317
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               208
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               266, 285
               

               Conread position:
               20-283
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               239, 17
               

               Conread position:
               22-295
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               195
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               24-253
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               26-285
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               96, 56
               

               Conread position:
               26-285
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 85
               

               Conread position:
               26-294
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               26-294
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               27-243
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               167
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               9, 200
               

               Conread position:
               28-294
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               90, 13
               

               Conread position:
               40-253
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 101
               

               Conread position:
               41-225
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               41-250
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               41-294
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               44-220
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               10, 58
               

               Conread position:
               53-192
               

               Cow position:
               
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               56-294
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               174, 65
               

               Conread position:
               57-199
               

               Cow position:
               
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               57-243
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               59-225
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               58, 51
               

               Conread position:
               63-206
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 47
               

               Conread position:
               70-285
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               76-289
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               78-267
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               92-253
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-350
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               21, 15
               

               Conread position:
               122-294
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               137-294
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               293-742
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               319
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               59, 47
               

               Conread position:
               293-829
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               385
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               58, 277
               

               Conread position:
               293-855
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               387
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               65, 47
               

               Conread position:
               372-730
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               38, 183
               

               Conread position:
               372-736
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               263
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               43, 183
               

               Conread position:
               372-856
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 168
               

               Conread position:
               377-730
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               33, 172
               

               Conread position:
               390-685
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               27, 60
               

               Conread position:
               441-876
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 5
               

               Conread position:
               442-675
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               41, 91
               

               Conread position:
               443-866
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               301
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               34, 97
               

               Conread position:
               444-730
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               7, 92
               

               Conread position:
               444-742
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               7, 97
               

               Conread position:
               444-742
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               7, 92
               

               Conread position:
               444-789
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               115, 92
               

               Conread position:
               444-855
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               268
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               7, 92
               

               Conread position:
               446-804
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               448-850
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               296
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               34, 87
               

               Conread position:
               452-685
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               107, 78
               

               Conread position:
               452-731
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               102, 31
               

               Conread position:
               456-847
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               27, 82
               

               Conread position:
               462-747
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               21, 73
               

               Conread position:
               472-688
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               506-871
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               257
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               52, 30
               

               Conread position:
               693-861
               

               Cow position:
               
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               60, 0
               
Show alignments to all cow chromosomes.